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COMMD5P1 COMMD5 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 101928879, updated on 10-Oct-2023

Summary

Official Symbol
COMMD5P1provided by HGNC
Official Full Name
COMMD5 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:56190
See related
Ensembl:ENSG00000173966
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See COMMD5P1 in Genome Data Viewer
Location:
4q12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (53575714..53576387)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (57063001..57063674)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (54441881..54442554)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377654 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:54243526-54244074 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:54244075-54244623 Neighboring gene factor interacting with PAPOLA and CPSF1 Neighboring gene ligand of numb-protein X 1 Neighboring gene LNX1 antisense RNA 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:54458833-54459745 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:54467685-54468184 Neighboring gene LNX1 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21566 Neighboring gene uncharacterized LOC100506444 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21567 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21568 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:54584896-54585497

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_073442.1 

    Range
    101..774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    53575714..53576387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    57063001..57063674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)