Database Division |
BLAST Databases at NCBI |
FASTA Databases at EBI |
Location of "Finished" HTG records |
|---|---|---|---|
BCT Bacterial |
nr1, month |
emall, emnew, ebact |
|
PRO Prokaryotic |
emall, emnew, epro |
||
FUN Fungal |
emall, emnew, efun |
||
HUM Human |
emall, emnew, ehum |
H. sapiens (EMBL) |
|
PRI Primate |
nr, month |
H. sapiens (GenBank) |
|
ROD Rodent |
nr, month |
emall, emnew, erod |
|
MAM Other mammalian |
nr, month |
emall, emnew, emam |
|
VRT Other vertebrate |
nr, month |
emall, emnew, evrt |
|
INV Invertebrate |
nr, month |
emall, emnew, einv |
C. elegans & D. melanogaster |
PLN Plant |
nr2, month |
emall, emnew, epln |
A. thaliana |
ORG Organelle |
emall, emnew, eorg |
||
VRL Viral |
nr, month |
emall, emnew, evrl |
|
PHG Phage |
nr, month |
emall, emnew, ephg |
|
RNA Structural RNA |
nr, month |
emall, emnew, erna |
|
SYN Synthetic/chimeric |
nr, month |
emall, emnew, esyn |
|
UNA Unannotated |
nr, month |
emall, emnew, euna |
|
EST Expressed sequence tags |
dbest3, month |
eest |
|
STS Sequence tagged sites |
dbsts, month |
ests |
|
GSS Genome survey |
dbgss, month |
emall, emnew |
|
HTG High throughput genomic |
htgs, month |
emall, emnew |
Includes all "unfinished" HTG |
PAT Patent |
nr, month |
emall, emnew, epat |
1 NCBI offers "ecoli" as a separate BLAST database for queries against Escherichia coli genome and protein sequences.
2 NCBI offers "yeast" as a separate BLAST database for queries against the Saccharomyces cerevisiae genome and protein sequences.
3 NCBI plans to split dbest into three files of "human only", "mouse only", and all "non-human, non-mouse" ESTs.
Abbreviations: month, a rolling month database consisting of nucleotide or protein sequences added to nr in the last 28 days; nr, a "non-redundant" nucleotide (or protein) database of all sequences excluding ESTs, STSs, GSSs and HTGs; emnew, new EMBL entries since latest release; emall, all EMBL entries, latest release + new (Other FASTA database acronyms are derived from the EMBL division to which they correspond).