GEO DataSets

(Submitter supplied) East African cichlid fishes have diversified in an explosive fashion, but the (epi)genetic basis of the phenotypic diversity of these fishes remains largely unknown. Although transposable elements (TEs) have been associated with phenotypic variation in cichlids, little is known about their transcriptional activity and epigenetic silencing. Here, we describe dynamic patterns of TE expression in African cichlid gonads and during early development. more...

Organism:

Astatotilapia calliptera; Pundamilia nyererei; Tropheops sp. 'mauve'; Oreochromis niloticus; Haplochromis burtoni; Maylandia zebra

Type:

Non-coding RNA profiling by high throughput sequencing

6 related Platforms

31 Samples

Download data: TXT

(Submitter supplied) East African cichlid fishes have diversified in an explosive fashion, but the (epi)genetic basis of the phenotypic diversity of these fishes remains largely unknown. Although transposable elements (TEs) have been associated with phenotypic variation in cichlids, little is known about their transcriptional activity and epigenetic silencing. Here, we describe dynamic patterns of TE expression in African cichlid gonads and during early development. more...

Organism:

Oreochromis niloticus; Maylandia zebra; Astatotilapia calliptera; Tropheops sp. 'mauve'; Pundamilia nyererei; Haplochromis burtoni

Type:

Expression profiling by high throughput sequencing

6 related Platforms

40 Samples

Download data: TXT

(Submitter supplied) Whole-genome methylomes and total transcriptomes for muscle and liver tissues of Lake Malawi cichlid species characterised in the context of phenotypic diversification.

Organism:

Astatotilapia calliptera; Pundamilia nyererei; Petrotilapia genalutea; Aulonocara stuartgranti; Maylandia zebra; Rhamphochromis longiceps; Diplotaxodon limnothrissa

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

11 related Platforms

60 Samples

Download data: BW, FA, TXT

(Submitter supplied) Metriaclima estherae, Protomelas similis, Rhamphochromis "chilingali", and Astatotilapia tweddlei genomic DNA hybridized with Astatotilapia burtoni genomic DNA

Organism:

Protomelas similis; Haplochromis tweddlei; Maylandia estherae; Haplochromis burtoni; Rhamphochromis sp. 'chilingali'

Type:

Genome variation profiling by array

Platform:

GPL6416

8 Samples

Download data: GPR

(Submitter supplied) The control of transposable element (TE) activity in germ cells provides genome integrity over generations. A distinct small RNA-mediated pathway utilizing Piwi-interacting RNAs (piRNAs) suppresses TE expression in gonads of metazoans. In the fly, primary piRNAs derive from so-called piRNA clusters, which are enriched in damaged repeated sequences. These piRNAs launch a cycle of TE and piRNA cluster transcript cleavages resulting in the amplification of piRNA and TE silencing. more...

Organism:

Drosophila melanogaster

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL13304

1 Sample

Download data: TXT