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Items: 15

1.

Adaptive Evolution of a Minimal Organism with a Synthetic Genome

(Submitter supplied) The bacterial strain JCVI-syn3.0 stands as the first example of a living organism with a  minimized synthetic genome, derived from the Mycoplasma mycoides genome and  chemically synthesized in vitro. Here we report the experimental evolution of a syn3.0- derived strain. Ten independent replicates were evolved for several hundred  generations, leading to growth rate improvements of >15%. Endpoint strains possessed  an average of 8 mutations composed of indels and SNPs, with a pronounced C/G->A/T  transversion bias. more...
Organism:
synthetic bacterium JCVI-Syn3A
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32299
13 Samples
Download data: CSV, FASTA, GFF3
Series
Accession:
GSE205017
ID:
200205017

2.

Illumina HiSeq 4000 (synthetic bacterium JCVI-Syn3A)

Organism:
synthetic bacterium JCVI-Syn3A
1 Series
13 Samples
Download data
Platform
Accession:
GPL32299
ID:
100032299

3.

Syn3A cells, colony A3_S, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204187
ID:
306204187

SRA Run Selector

4.

Syn3A cells, colony A3_1Plus, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204186
ID:
306204186

SRA Run Selector

5.

Syn3A cells, colony A2, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204185
ID:
306204185

SRA Run Selector

6.

Syn3A cells, colony A1L, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204184
ID:
306204184

SRA Run Selector

7.

Syn3A cells, colony A1_S, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204183
ID:
306204183

SRA Run Selector

8.

Syn3A cells, colony A1_L, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204182
ID:
306204182

SRA Run Selector

9.

Syn3A cells, colony A8, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204181
ID:
306204181

SRA Run Selector

10.

Syn3A cells, colony A7, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204180
ID:
306204180

SRA Run Selector

11.

Syn3A cells, colony A6 Plus, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204179
ID:
306204179

SRA Run Selector

12.

Syn3A cells, colony A5, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204178
ID:
306204178

SRA Run Selector

13.

Syn3A cells, colony A4, endpoint evolution

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204177
ID:
306204177

SRA Run Selector

14.

Syn3A cells, wildtype normal

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204176
ID:
306204176

SRA Run Selector

15.

Syn3A cells, wildtype stationary

Organism:
synthetic bacterium JCVI-Syn3A
Source name:
synthetic bacterium
Platform:
GPL32299
Series:
GSE205017
Download data: CSV
Sample
Accession:
GSM6204175
ID:
306204175

SRA Run Selector

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