nsv993400

Organism: Homo sapiens

Study:nstd94 (Helman et al. 2014)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:34
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Helman et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 139 SVs from 37 studies. See in: genome view

Remapped(Score: Perfect):53,533,116-53,533,116

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv993400	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nsv993400	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	54,036,370	54,036,370

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3351692	mobile element insertion	TCGA-21-1082	Sequencing	Split read and paired-end mapping	605
nssv3351693	mobile element insertion	TCGA-CR-6480	Sequencing	Split read and paired-end mapping	908
nssv3351694	mobile element insertion	TCGA-CV-6961	Sequencing	Split read and paired-end mapping	1,102
nssv3351695	mobile element insertion	TCGA-BA-4076	Sequencing	Split read and paired-end mapping	1,051
nssv3351696	mobile element insertion	TCGA-BA-6873	Sequencing	Split read and paired-end mapping	1,110
nssv3351697	mobile element insertion	TCGA-CN-4737	Sequencing	Split read and paired-end mapping	1,125
nssv3351698	mobile element insertion	TCGA-CV-7090	Sequencing	Split read and paired-end mapping	927
nssv3351699	mobile element insertion	TCGA-CV-7255	Sequencing	Split read and paired-end mapping	909
nssv3351700	mobile element insertion	TCGA-AP-A0LE	Sequencing	Split read and paired-end mapping	971
nssv3351701	mobile element insertion	TCGA-AX-A1CI	Sequencing	Split read and paired-end mapping	1,089
nssv3351702	mobile element insertion	TCGA-05-4420	Sequencing	Split read and paired-end mapping	554
nssv3351703	mobile element insertion	TCGA-50-6597	Sequencing	Split read and paired-end mapping	1,089
nssv3351704	mobile element insertion	TCGA-55-1594	Sequencing	Split read and paired-end mapping	721
nssv3351705	mobile element insertion	TCGA-73-4659	Sequencing	Split read and paired-end mapping	739
nssv3351706	mobile element insertion	TCGA-75-5147	Sequencing	Split read and paired-end mapping	1,151
nssv3351707	mobile element insertion	TCGA-02-2485	Sequencing	Split read and paired-end mapping	1,277
nssv3351708	mobile element insertion	TCGA-06-5415	Sequencing	Split read and paired-end mapping	1,088
nssv3351709	mobile element insertion	TCGA-19-2624	Sequencing	Split read and paired-end mapping	1,059
nssv3351710	mobile element insertion	TCGA-26-5135	Sequencing	Split read and paired-end mapping	1,101
nssv3351711	mobile element insertion	TCGA-27-1831	Sequencing	Split read and paired-end mapping	1,170
nssv3351712	mobile element insertion	TCGA-CZ-4856	Sequencing	Split read and paired-end mapping	121
nssv3351713	mobile element insertion	TCGA-B2-4101	Sequencing	Split read and paired-end mapping	933
nssv3351714	mobile element insertion	TCGA-CJ-4918	Sequencing	Split read and paired-end mapping	937
nssv3351715	mobile element insertion	TCGA-CJ-5682	Sequencing	Split read and paired-end mapping	1,162
nssv3351716	mobile element insertion	TCGA-24-0982	Sequencing	Split read and paired-end mapping	651
nssv3351717	mobile element insertion	TCGA-13-0890	Sequencing	Split read and paired-end mapping	1,187
nssv3351718	mobile element insertion	TCGA-A1-A0SM	Sequencing	Split read and paired-end mapping	1,136
nssv3351719	mobile element insertion	TCGA-A8-A08S	Sequencing	Split read and paired-end mapping	984
nssv3351720	mobile element insertion	TCGA-A8-A092	Sequencing	Split read and paired-end mapping	835
nssv3351721	mobile element insertion	TCGA-A8-A07B	Sequencing	Split read and paired-end mapping	1,037
nssv3351722	mobile element insertion	TCGA-A8-A08L	Sequencing	Split read and paired-end mapping	922
nssv3351723	mobile element insertion	TCGA-A8-A09I	Sequencing	Split read and paired-end mapping	1,049
nssv3351724	mobile element insertion	TCGA-A8-A09X	Sequencing	Split read and paired-end mapping	847
nssv3351725	mobile element insertion	TCGA-BH-A18R	Sequencing	Split read and paired-end mapping	1,162

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv3351692	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351693	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351694	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351695	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351696	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351697	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351698	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351699	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351700	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351701	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351702	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351703	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351704	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351705	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351706	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351707	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351708	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351709	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351710	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351711	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351712	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351713	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351714	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351715	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351716	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351717	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351718	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351719	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351720	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351721	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351722	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351723	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351724	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351725	Remapped	Perfect	NC_000019.10:g.535 33116_53533117ins?	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,533,116	53,533,116
nssv3351692	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351693	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351694	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351695	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351696	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351697	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351698	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351699	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351700	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351701	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351702	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351703	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351704	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351705	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351706	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351707	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351708	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351709	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351710	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351711	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351712	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351713	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351714	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351715	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351716	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351717	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351718	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351719	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351720	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351721	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351722	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351723	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351724	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370
nssv3351725	Submitted genomic		NC_000019.9:g.5403 6370_54036371ins?	GRCh37 (hg19)		NC_000019.9	Chr19	54,036,370	54,036,370

dbVar

Database of genomic structural variation

nsv993400

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant