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dbVar

Database of genomic structural variation

nsv984830

Organism: Homo sapiens

Study:nstd11 (Walter et al. 2009)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: Yes
Region Size:155,752,372

Publication(s):Walter et al. 2009

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 237752 SVs from 123 studies. See in: genome view

Remapped(Score: Good):251,810-156,004,181

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv984830	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	251,810	156,004,181
nsv984830	Remapped	Good	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	168,477	155,233,846
nsv984830	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000023.9	ChrX	108,477	154,887,040

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation
nssv459385	copy number loss	SNP array	SNP genotyping analysis	Leukemia, Myeloid, Acute	not provided	Submitter
nssv459388	copy number loss	SNP array	SNP genotyping analysis	Leukemia, Myeloid, Acute	not provided	Submitter

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv459385	Remapped	Good	NC_000023.11:g.(?_ 251810)_(156004181 _?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	251,810	156,004,181
nssv459388	Remapped	Good	NC_000023.11:g.(?_ 251810)_(156004181 _?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	251,810	156,004,181
nssv459385	Remapped	Good	NC_000023.10:g.(?_ 168477)_(155233846 _?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	168,477	155,233,846
nssv459388	Remapped	Good	NC_000023.10:g.(?_ 168477)_(155233846 _?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	168,477	155,233,846
nssv459385	Submitted genomic		NC_000023.9:g.(?_1 08477)_(154887040_ ?)del	NCBI36 (hg18)		NC_000023.9	ChrX	108,477	154,887,040
nssv459388	Submitted genomic		NC_000023.9:g.(?_1 08477)_(154887040_ ?)del	NCBI36 (hg18)		NC_000023.9	ChrX	108,477	154,887,040

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation
nssv459385	NCBI36: NC_000023.9:g.(?_108477)_(154887040_?)del	copy number loss	somatic	Leukemia, Myeloid, Acute	not provided	Submitter
nssv459388	NCBI36: NC_000023.9:g.(?_108477)_(154887040_?)del	copy number loss	somatic	Leukemia, Myeloid, Acute	not provided	Submitter

No genotype data were submitted for this variant

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