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dbVar

Database of genomic structural variation

nsv9796

Organism: Homo sapiens

Study:nstd4 (Perry et al. 2008)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:35,421

Publication(s):Perry et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 81 SVs from 18 studies. See in: genome view

Remapped(Score: Perfect):25,963,552-25,998,972

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv9796	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	25,963,552	25,998,972
nsv9796	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000020.10	Chr20	25,944,188	25,979,608
nsv9796	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000020.9	Chr20	25,892,188	25,927,608

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv25094	copy number loss	NA18552	Oligo aCGH	Probe signal intensity	537
nssv28642	copy number gain	NA19221	Oligo aCGH	Probe signal intensity	857

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv25094	Remapped	Perfect	NC_000020.11:g.(25 963552_25975617)_( 25998475_25998972) del	GRCh38.p12	First Pass	NC_000020.11	Chr20	25,963,552	25,975,617	25,998,475	25,998,972
nssv28642	Remapped	Perfect	NC_000020.11:g.(25 979424_25983726)_( 25998475_25998972) dup	GRCh38.p12	First Pass	NC_000020.11	Chr20	25,979,424	25,983,726	25,998,475	25,998,972
nssv25094	Remapped	Perfect	NC_000020.10:g.(25 944188_25956253)_( 25979111_25979608) del	GRCh37.p13	First Pass	NC_000020.10	Chr20	25,944,188	25,956,253	25,979,111	25,979,608
nssv28642	Remapped	Perfect	NC_000020.10:g.(25 960060_25964362)_( 25979111_25979608) dup	GRCh37.p13	First Pass	NC_000020.10	Chr20	25,960,060	25,964,362	25,979,111	25,979,608
nssv25094	Submitted genomic		NC_000020.9:g.(258 92188_25904253)_(2 5927111_25927608)d el	NCBI35 (hg17)		NC_000020.9	Chr20	25,892,188	25,904,253	25,927,111	25,927,608
nssv28642	Submitted genomic		NC_000020.9:g.(259 08060_25912362)_(2 5927111_25927608)d up	NCBI35 (hg17)		NC_000020.9	Chr20	25,908,060	25,912,362	25,927,111	25,927,608

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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