nsv9477
- Organism: Homo sapiens
- Study:nstd4 (Perry et al. 2008)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI35 (hg17)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:38,765
- Publication(s):Perry et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 438 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 438 SVs from 33 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
nsv9477 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 89,569,883 | 89,608,647 |
nsv9477 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 89,636,291 | 89,675,055 |
nsv9477 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000016.8 | Chr16 | 88,163,792 | 88,202,556 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv25268 | copy number gain | NA12155 | Oligo aCGH | Probe signal intensity | 667 |
nssv28131 | copy number gain | NA19221 | Oligo aCGH | Probe signal intensity | 857 |
nssv24149 | copy number gain | NA12740 | Oligo aCGH | Probe signal intensity | 572 |
nssv23837 | copy number gain | NA18980 | Oligo aCGH | Probe signal intensity | 561 |
nssv26625 | copy number gain | NA19132 | Oligo aCGH | Probe signal intensity | 684 |
nssv26791 | copy number gain | NA18502 | Oligo aCGH | Probe signal intensity | 703 |
nssv22072 | copy number loss | NA18942 | Oligo aCGH | Probe signal intensity | 504 |
nssv22685 | copy number gain | NA10863 | Oligo aCGH | Probe signal intensity | 530 |
nssv22770 | copy number gain | NA07029 | Oligo aCGH | Probe signal intensity | 544 |
nssv23285 | copy number gain | NA07048 | Oligo aCGH | Probe signal intensity | 564 |
nssv24175 | copy number gain | NA12740 | Oligo aCGH | Probe signal intensity | 572 |
nssv25927 | copy number gain | NA18504 | Oligo aCGH | Probe signal intensity | 700 |
nssv26749 | copy number gain | NA18517 | Oligo aCGH | Probe signal intensity | 698 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv25268 | Remapped | Perfect | NC_000016.10:g.(89 569883_89570567)_( 89604827_89608647) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,569,883 | 89,570,567 | 89,604,827 | 89,608,647 |
nssv28131 | Remapped | Perfect | NC_000016.10:g.(89 572391_89573333)_( 89586703_89587552) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,572,391 | 89,573,333 | 89,586,703 | 89,587,552 |
nssv24149 | Remapped | Perfect | NC_000016.10:g.(89 573333_89574453)_( 89575054_89577040) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,573,333 | 89,574,453 | 89,575,054 | 89,577,040 |
nssv23837 | Remapped | Perfect | NC_000016.10:g.(89 578885_89579443)_( 89580196_89581482) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,578,885 | 89,579,443 | 89,580,196 | 89,581,482 |
nssv26625 | Remapped | Perfect | NC_000016.10:g.(89 578885_89579443)_( 89580196_89581482) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,578,885 | 89,579,443 | 89,580,196 | 89,581,482 |
nssv26791 | Remapped | Perfect | NC_000016.10:g.(89 578885_89579443)_( 89580196_89581482) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,578,885 | 89,579,443 | 89,580,196 | 89,581,482 |
nssv22072 | Remapped | Perfect | NC_000016.10:g.(89 586703_89587552)_( 89588264_89589344) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,586,703 | 89,587,552 | 89,588,264 | 89,589,344 |
nssv22685 | Remapped | Perfect | NC_000016.10:g.(89 586703_89587552)_( 89588264_89589344) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,586,703 | 89,587,552 | 89,588,264 | 89,589,344 |
nssv22770 | Remapped | Perfect | NC_000016.10:g.(89 586703_89587552)_( 89588264_89589344) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,586,703 | 89,587,552 | 89,588,264 | 89,589,344 |
nssv23285 | Remapped | Perfect | NC_000016.10:g.(89 586703_89587552)_( 89588264_89589344) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,586,703 | 89,587,552 | 89,588,264 | 89,589,344 |
nssv24175 | Remapped | Perfect | NC_000016.10:g.(89 586703_89587552)_( 89588264_89589344) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,586,703 | 89,587,552 | 89,588,264 | 89,589,344 |
nssv25927 | Remapped | Perfect | NC_000016.10:g.(89 586703_89587552)_( 89588264_89589344) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,586,703 | 89,587,552 | 89,588,264 | 89,589,344 |
nssv26749 | Remapped | Perfect | NC_000016.10:g.(89 586703_89587552)_( 89588264_89589344) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 89,586,703 | 89,587,552 | 89,588,264 | 89,589,344 |
nssv25268 | Remapped | Perfect | NC_000016.9:g.(896 36291_89636975)_(8 9671235_89675055)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,636,291 | 89,636,975 | 89,671,235 | 89,675,055 |
nssv28131 | Remapped | Perfect | NC_000016.9:g.(896 38799_89639741)_(8 9653111_89653960)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,638,799 | 89,639,741 | 89,653,111 | 89,653,960 |
nssv24149 | Remapped | Perfect | NC_000016.9:g.(896 39741_89640861)_(8 9641462_89643448)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,639,741 | 89,640,861 | 89,641,462 | 89,643,448 |
nssv23837 | Remapped | Perfect | NC_000016.9:g.(896 45293_89645851)_(8 9646604_89647890)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,645,293 | 89,645,851 | 89,646,604 | 89,647,890 |
nssv26625 | Remapped | Perfect | NC_000016.9:g.(896 45293_89645851)_(8 9646604_89647890)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,645,293 | 89,645,851 | 89,646,604 | 89,647,890 |
nssv26791 | Remapped | Perfect | NC_000016.9:g.(896 45293_89645851)_(8 9646604_89647890)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,645,293 | 89,645,851 | 89,646,604 | 89,647,890 |
nssv22072 | Remapped | Perfect | NC_000016.9:g.(896 53111_89653960)_(8 9654672_89655752)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,653,111 | 89,653,960 | 89,654,672 | 89,655,752 |
nssv22685 | Remapped | Perfect | NC_000016.9:g.(896 53111_89653960)_(8 9654672_89655752)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,653,111 | 89,653,960 | 89,654,672 | 89,655,752 |
nssv22770 | Remapped | Perfect | NC_000016.9:g.(896 53111_89653960)_(8 9654672_89655752)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,653,111 | 89,653,960 | 89,654,672 | 89,655,752 |
nssv23285 | Remapped | Perfect | NC_000016.9:g.(896 53111_89653960)_(8 9654672_89655752)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,653,111 | 89,653,960 | 89,654,672 | 89,655,752 |
nssv24175 | Remapped | Perfect | NC_000016.9:g.(896 53111_89653960)_(8 9654672_89655752)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,653,111 | 89,653,960 | 89,654,672 | 89,655,752 |
nssv25927 | Remapped | Perfect | NC_000016.9:g.(896 53111_89653960)_(8 9654672_89655752)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,653,111 | 89,653,960 | 89,654,672 | 89,655,752 |
nssv26749 | Remapped | Perfect | NC_000016.9:g.(896 53111_89653960)_(8 9654672_89655752)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 89,653,111 | 89,653,960 | 89,654,672 | 89,655,752 |
nssv25268 | Submitted genomic | NC_000016.8:g.(881 63792_88164476)_(8 8198736_88202556)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,163,792 | 88,164,476 | 88,198,736 | 88,202,556 | ||
nssv28131 | Submitted genomic | NC_000016.8:g.(881 66300_88167242)_(8 8180612_88181461)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,166,300 | 88,167,242 | 88,180,612 | 88,181,461 | ||
nssv24149 | Submitted genomic | NC_000016.8:g.(881 67242_88168362)_(8 8168963_88170949)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,167,242 | 88,168,362 | 88,168,963 | 88,170,949 | ||
nssv23837 | Submitted genomic | NC_000016.8:g.(881 72794_88173352)_(8 8174105_88175391)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,172,794 | 88,173,352 | 88,174,105 | 88,175,391 | ||
nssv26625 | Submitted genomic | NC_000016.8:g.(881 72794_88173352)_(8 8174105_88175391)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,172,794 | 88,173,352 | 88,174,105 | 88,175,391 | ||
nssv26791 | Submitted genomic | NC_000016.8:g.(881 72794_88173352)_(8 8174105_88175391)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,172,794 | 88,173,352 | 88,174,105 | 88,175,391 | ||
nssv22072 | Submitted genomic | NC_000016.8:g.(881 80612_88181461)_(8 8182173_88183253)d el | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,180,612 | 88,181,461 | 88,182,173 | 88,183,253 | ||
nssv22685 | Submitted genomic | NC_000016.8:g.(881 80612_88181461)_(8 8182173_88183253)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,180,612 | 88,181,461 | 88,182,173 | 88,183,253 | ||
nssv22770 | Submitted genomic | NC_000016.8:g.(881 80612_88181461)_(8 8182173_88183253)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,180,612 | 88,181,461 | 88,182,173 | 88,183,253 | ||
nssv23285 | Submitted genomic | NC_000016.8:g.(881 80612_88181461)_(8 8182173_88183253)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,180,612 | 88,181,461 | 88,182,173 | 88,183,253 | ||
nssv24175 | Submitted genomic | NC_000016.8:g.(881 80612_88181461)_(8 8182173_88183253)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,180,612 | 88,181,461 | 88,182,173 | 88,183,253 | ||
nssv25927 | Submitted genomic | NC_000016.8:g.(881 80612_88181461)_(8 8182173_88183253)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,180,612 | 88,181,461 | 88,182,173 | 88,183,253 | ||
nssv26749 | Submitted genomic | NC_000016.8:g.(881 80612_88181461)_(8 8182173_88183253)d up | NCBI35 (hg17) | NC_000016.8 | Chr16 | 88,180,612 | 88,181,461 | 88,182,173 | 88,183,253 |