nsv900625
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:446,779
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1590 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 1590 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 565 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv900625 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 82,162,799 | 82,196,569 | 82,589,782 | 82,609,577 |
| nsv900625 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 82,736,934 | 82,770,704 | 83,163,917 | 83,183,712 |
| nsv900625 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 81,634,935 | 81,668,705 | 82,061,918 | 82,081,713 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1567041 | copy number loss | IS31041 | SNP array | SNP genotyping analysis | 83 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1567041 | Remapped | Perfect | NC_000013.11:g.(82 162799_82196569)_( 82589782_82609577) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 82,162,799 | 82,196,569 | 82,589,782 | 82,609,577 |
| nssv1567041 | Remapped | Perfect | NC_000013.10:g.(82 736934_82770704)_( 83163917_83183712) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 82,736,934 | 82,770,704 | 83,163,917 | 83,183,712 |
| nssv1567041 | Submitted genomic | NC_000013.9:g.(816 34935_81668705)_(8 2061918_82081713)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 81,634,935 | 81,668,705 | 82,061,918 | 82,081,713 |