nsv900624
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:558,623
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1914 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1914 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 668 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv900624 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 82,075,298 | 82,118,153 | 82,624,816 | 82,633,920 |
| nsv900624 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 82,649,433 | 82,692,288 | 83,198,951 | 83,208,055 |
| nsv900624 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 81,547,434 | 81,590,289 | 82,096,952 | 82,106,056 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1583003 | copy number loss | IS36219 | SNP array | SNP genotyping analysis | 125 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1583003 | Remapped | Perfect | NC_000013.11:g.(82 075298_82118153)_( 82624816_82633920) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 82,075,298 | 82,118,153 | 82,624,816 | 82,633,920 |
| nssv1583003 | Remapped | Perfect | NC_000013.10:g.(82 649433_82692288)_( 83198951_83208055) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 82,649,433 | 82,692,288 | 83,198,951 | 83,208,055 |
| nssv1583003 | Submitted genomic | NC_000013.9:g.(815 47434_81590289)_(8 2096952_82106056)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 81,547,434 | 81,590,289 | 82,096,952 | 82,106,056 |