nsv900609
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:457,133
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1507 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 1507 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 505 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv900609 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 81,739,437 | 81,745,959 | 82,162,799 | 82,196,569 |
| nsv900609 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 82,313,572 | 82,320,094 | 82,736,934 | 82,770,704 |
| nsv900609 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 81,211,573 | 81,218,095 | 81,634,935 | 81,668,705 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1591076 | copy number loss | IS38633 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1591076 | Remapped | Perfect | NC_000013.11:g.(81 739437_81745959)_( 82162799_82196569) del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 81,739,437 | 81,745,959 | 82,162,799 | 82,196,569 |
| nssv1591076 | Remapped | Perfect | NC_000013.10:g.(82 313572_82320094)_( 82736934_82770704) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 82,313,572 | 82,320,094 | 82,736,934 | 82,770,704 |
| nssv1591076 | Submitted genomic | NC_000013.9:g.(812 11573_81218095)_(8 1634935_81668705)d el | NCBI36 (hg18) | NC_000013.9 | Chr13 | 81,211,573 | 81,218,095 | 81,634,935 | 81,668,705 |