nsv879106
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:564,928
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2253 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 2253 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 693 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv879106 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 63,686,606 | 63,695,364 | 64,246,832 | 64,251,533 |
| nsv879106 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 64,552,324 | 64,561,082 | 65,112,550 | 65,117,251 |
| nsv879106 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 64,234,919 | 64,243,677 | 64,795,145 | 64,799,846 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1546093 | copy number loss | MS17114 | SNP array | SNP genotyping analysis | 219 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1546093 | Remapped | Perfect | NC_000004.12:g.(63 686606_63695364)_( 64246832_64251533) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 63,686,606 | 63,695,364 | 64,246,832 | 64,251,533 |
| nssv1546093 | Remapped | Perfect | NC_000004.11:g.(64 552324_64561082)_( 65112550_65117251) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 64,552,324 | 64,561,082 | 65,112,550 | 65,117,251 |
| nssv1546093 | Submitted genomic | NC_000004.10:g.(64 234919_64243677)_( 64795145_64799846) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 64,234,919 | 64,243,677 | 64,795,145 | 64,799,846 |