nsv871494
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:112,780
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 541 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 541 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 167 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv871494 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 102,888,582 | 102,890,209 | 102,993,981 | 103,001,361 |
| nsv871494 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 103,354,138 | 103,355,765 | 103,459,537 | 103,466,917 |
| nsv871494 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 103,126,726 | 103,128,353 | 103,232,125 | 103,239,505 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1566973 | copy number loss | IS31041 | SNP array | SNP genotyping analysis | 83 |
| nssv1571236 | copy number gain | IS32653 | SNP array | SNP genotyping analysis | 20 |
| nssv1588723 | copy number loss | IS38239 | SNP array | SNP genotyping analysis | 28 |
| nssv1594520 | copy number loss | IS39923 | SNP array | SNP genotyping analysis | 30 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1566973 | Remapped | Perfect | NC_000001.11:g.(10 2888582_102890209) _(102993981_103001 361)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 102,888,582 | 102,890,209 | 102,993,981 | 103,001,361 |
| nssv1571236 | Remapped | Perfect | NC_000001.11:g.(10 2888582_102890209) _(102993981_103001 361)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 102,888,582 | 102,890,209 | 102,993,981 | 103,001,361 |
| nssv1588723 | Remapped | Perfect | NC_000001.11:g.(10 2888582_102890209) _(102993981_103001 361)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 102,888,582 | 102,890,209 | 102,993,981 | 103,001,361 |
| nssv1594520 | Remapped | Perfect | NC_000001.11:g.(10 2888582_102890209) _(102993981_103001 361)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 102,888,582 | 102,890,209 | 102,993,981 | 103,001,361 |
| nssv1566973 | Remapped | Perfect | NC_000001.10:g.(10 3354138_103355765) _(103459537_103466 917)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 103,354,138 | 103,355,765 | 103,459,537 | 103,466,917 |
| nssv1571236 | Remapped | Perfect | NC_000001.10:g.(10 3354138_103355765) _(103459537_103466 917)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 103,354,138 | 103,355,765 | 103,459,537 | 103,466,917 |
| nssv1588723 | Remapped | Perfect | NC_000001.10:g.(10 3354138_103355765) _(103459537_103466 917)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 103,354,138 | 103,355,765 | 103,459,537 | 103,466,917 |
| nssv1594520 | Remapped | Perfect | NC_000001.10:g.(10 3354138_103355765) _(103459537_103466 917)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 103,354,138 | 103,355,765 | 103,459,537 | 103,466,917 |
| nssv1566973 | Submitted genomic | NC_000001.9:g.(103 126726_103128353)_ (103232125_1032395 05)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,126,726 | 103,128,353 | 103,232,125 | 103,239,505 | ||
| nssv1571236 | Submitted genomic | NC_000001.9:g.(103 126726_103128353)_ (103232125_1032395 05)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,126,726 | 103,128,353 | 103,232,125 | 103,239,505 | ||
| nssv1588723 | Submitted genomic | NC_000001.9:g.(103 126726_103128353)_ (103232125_1032395 05)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,126,726 | 103,128,353 | 103,232,125 | 103,239,505 | ||
| nssv1594520 | Submitted genomic | NC_000001.9:g.(103 126726_103128353)_ (103232125_1032395 05)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,126,726 | 103,128,353 | 103,232,125 | 103,239,505 |