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dbVar

Database of genomic structural variation

nsv869744

Organism: Homo sapiens

Study:nstd53 (Tuttelmann et al. 2011)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:179,662

Publication(s):Tüttelmann et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 667 SVs from 66 studies. See in: genome view

Remapped(Score: Perfect):26,256,190-26,435,851

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv869744	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	26,256,190	26,274,520	26,423,271	26,435,851
nsv869744	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	26,256,188	26,274,518	26,423,269	26,435,849
nsv869744	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000009.10	Chr9	26,246,188	26,264,518	26,413,269	26,425,849

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1497257	copy number loss	SCOS_18	Oligo aCGH	Probe signal intensity	22
nssv1497443	copy number loss	SCOS_32	Oligo aCGH	Probe signal intensity	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1497257	Remapped	Perfect	NC_000009.12:g.(26 256190_26274520)_( 26423271_26435851) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	26,256,190	26,274,520	26,423,271	26,435,851
nssv1497443	Remapped	Perfect	NC_000009.12:g.(26 256190_26274520)_( 26423271_26435851) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	26,256,190	26,274,520	26,423,271	26,435,851
nssv1497257	Remapped	Perfect	NC_000009.11:g.(26 256188_26274518)_( 26423269_26435849) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	26,256,188	26,274,518	26,423,269	26,435,849
nssv1497443	Remapped	Perfect	NC_000009.11:g.(26 256188_26274518)_( 26423269_26435849) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	26,256,188	26,274,518	26,423,269	26,435,849
nssv1497257	Submitted genomic		NC_000009.10:g.(26 246188_26264518)_( 26413269_26425849) del	NCBI36 (hg18)		NC_000009.10	Chr9	26,246,188	26,264,518	26,413,269	26,425,849
nssv1497443	Submitted genomic		NC_000009.10:g.(26 246188_26264518)_( 26413269_26425849) del	NCBI36 (hg18)		NC_000009.10	Chr9	26,246,188	26,264,518	26,413,269	26,425,849

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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