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dbVar

Database of genomic structural variation

nsv825432

Organism: Homo sapiens

Study:nstd67 (Park et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:99,043

Publication(s):Park et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 401 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):65,611,071-65,710,113

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv825432	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	65,611,071	65,710,113
nsv825432	Remapped	Pass	GRCh38.p12	PATCHES	Second Pass	NW_013171806.1	Chr10\|NW_0 13171806.1	111,664	185,507
nsv825432	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	67,370,829	67,469,871
nsv825432	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	67,040,835	67,139,877

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1439064	copy number loss	NA18973	Oligo aCGH	Probe signal intensity	782

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1439064	Remapped	Pass	NW_013171806.1:g.( ?_111664)_(185507_ ?)del	GRCh38.p12	Second Pass	NW_013171806.1	Chr10\|NW_0 13171806.1	111,664	185,507
nssv1439064	Remapped	Perfect	NC_000010.11:g.(?_ 65611071)_(6571011 3_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	65,611,071	65,710,113
nssv1439064	Remapped	Perfect	NC_000010.10:g.(?_ 67370829)_(6746987 1_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	67,370,829	67,469,871
nssv1439064	Submitted genomic		NC_000010.9:g.(?_6 7040835)_(67139877 _?)del	NCBI36 (hg18)		NC_000010.9	Chr10	67,040,835	67,139,877

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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