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dbVar

Database of genomic structural variation

nsv821490

Organism: Homo sapiens

Study:nstd65 (Ju et al. 2010)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:49,270

Publication(s):Ju et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 858 SVs from 86 studies. See in: genome view

Remapped(Score: Perfect):34,777,918-34,827,187

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv821490	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	34,777,918	34,827,187
nsv821490	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	270,247	319,516
nsv821490	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	34,779,540	34,828,809
nsv821490	Remapped	Perfect	GRCh37.p13	PATCHES	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	270,247	319,516
nsv821490	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	34,455,935	34,505,204

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1420408	deletion	NA10851	Sequencing	Read depth	1,299

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1420408	Remapped	Perfect	NW_003315915.1:g.( ?_270247)_(319516_ ?)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	270,247	319,516
nssv1420408	Remapped	Perfect	NC_000004.12:g.(?_ 34777918)_(3482718 7_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,777,918	34,827,187
nssv1420408	Remapped	Perfect	NW_003315915.1:g.( ?_270247)_(319516_ ?)del	GRCh37.p13	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	270,247	319,516
nssv1420408	Remapped	Perfect	NC_000004.11:g.(?_ 34779540)_(3482880 9_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	34,779,540	34,828,809
nssv1420408	Submitted genomic		NC_000004.10:g.(?_ 34455935)_(3450520 4_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	34,455,935	34,505,204

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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