nsv820211
- Organism: Homo sapiens
- Study:nstd43 (Kim et al. 2009)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:23,601
- Publication(s):Kim et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 194 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 194 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 20 SVs from 10 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv820211 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 26,800,918 | 26,824,518 |
| nsv820211 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 27,127,409 | 27,151,009 |
| nsv820211 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 26,999,996 | 27,023,596 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1418692 | copy number loss | SAMN00002681 | Oligo aCGH | Probe signal intensity | 1,333 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1418692 | Remapped | Perfect | NC_000001.11:g.(?_ 26800918)_(2682451 8_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 26,800,918 | 26,824,518 |
| nssv1418692 | Remapped | Perfect | NC_000001.10:g.(?_ 27127409)_(2715100 9_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 27,127,409 | 27,151,009 |
| nssv1418692 | Submitted genomic | NC_000001.9:g.(?_2 6999996)_(27023596 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 26,999,996 | 27,023,596 |