nsv819466
- Organism: Homo sapiens
- Study:nstd43 (Kim et al. 2009)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:23,333
- Publication(s):Kim et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 210 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 210 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 61 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv819466 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 151,478,846 | 151,502,178 |
| nsv819466 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 151,196,634 | 151,219,966 |
| nsv819466 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 152,679,324 | 152,702,656 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1418690 | copy number loss | SAMN00002681 | Oligo aCGH | Probe signal intensity | 1,333 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1418690 | Remapped | Perfect | NC_000003.12:g.(?_ 151478846)_(151502 178_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 151,478,846 | 151,502,178 |
| nssv1418690 | Remapped | Perfect | NC_000003.11:g.(?_ 151196634)_(151219 966_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 151,196,634 | 151,219,966 |
| nssv1418690 | Submitted genomic | NC_000003.10:g.(?_ 152679324)_(152702 656_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 152,679,324 | 152,702,656 |