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dbVar

Database of genomic structural variation

nsv818900

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:94,056

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 871 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):1,422,849-1,516,904

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv818900	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	1,422,849	1,516,904
nsv818900	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187529.1	Chr2\|NT_18 7529.1	105,969	199,275
nsv818900	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	1,426,621	1,520,676
nsv818900	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000002.9	Chr2	1,405,628	1,499,683

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1416297	copy number gain	NA18856	SNP array	Probe signal intensity	34

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1416297	Remapped	Good	NT_187529.1:g.(?_1 05969)_(199275_?)d up	GRCh38.p12	Second Pass	NT_187529.1	Chr2\|NT_18 7529.1	105,969	199,275
nssv1416297	Remapped	Perfect	NC_000002.12:g.(?_ 1422849)_(1516904_ ?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	1,422,849	1,516,904
nssv1416297	Remapped	Perfect	NC_000002.11:g.(?_ 1426621)_(1520676_ ?)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	1,426,621	1,520,676
nssv1416297	Submitted genomic		NC_000002.9:g.(?_1 405628)_(1499683_? )dup	NCBI35 (hg17)		NC_000002.9	Chr2	1,405,628	1,499,683

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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