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dbVar

Database of genomic structural variation

nsv818143

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:78,889

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 481 SVs from 68 studies. See in: genome view

Remapped(Score: Good):60,843,339-60,922,227

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv818143	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	60,843,339	60,922,227
nsv818143	Remapped	Good	GRCh37.p13	Primary Assembly	Second Pass	NC_000003.11	Chr3	60,830,770	60,907,899
nsv818143	Remapped	Good	GRCh37.p13	PATCHES	First Pass	NW_003871058.1	Chr3\|NW_00 3871058.1	272,500	349,629
nsv818143	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000003.9	Chr3	60,804,042	60,882,939

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1415824	copy number loss	NA11992	SNP array	Probe signal intensity	25
nssv1415825	copy number loss	NA10860	SNP array	Probe signal intensity	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1415824	Remapped	Good	NC_000003.12:g.(?_ 60843339)_(6092222 7_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	60,843,339	60,922,227
nssv1415825	Remapped	Good	NC_000003.12:g.(?_ 60843339)_(6092222 7_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	60,843,339	60,922,227
nssv1415824	Remapped	Good	NW_003871058.1:g.( ?_272500)_(349629_ ?)del	GRCh37.p13	First Pass	NW_003871058.1	Chr3\|NW_00 3871058.1	272,500	349,629
nssv1415825	Remapped	Good	NW_003871058.1:g.( ?_272500)_(349629_ ?)del	GRCh37.p13	First Pass	NW_003871058.1	Chr3\|NW_00 3871058.1	272,500	349,629
nssv1415824	Remapped	Good	NC_000003.11:g.(?_ 60830770)_(6090789 9_?)del	GRCh37.p13	Second Pass	NC_000003.11	Chr3	60,830,770	60,907,899
nssv1415825	Remapped	Good	NC_000003.11:g.(?_ 60830770)_(6090789 9_?)del	GRCh37.p13	Second Pass	NC_000003.11	Chr3	60,830,770	60,907,899
nssv1415824	Submitted genomic		NC_000003.9:g.(?_6 0804042)_(60882939 _?)del	NCBI35 (hg17)		NC_000003.9	Chr3	60,804,042	60,882,939
nssv1415825	Submitted genomic		NC_000003.9:g.(?_6 0804042)_(60882939 _?)del	NCBI35 (hg17)		NC_000003.9	Chr3	60,804,042	60,882,939

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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