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dbVar

Database of genomic structural variation

nsv817836

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:30,482

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1068 SVs from 84 studies. See in: genome view

Remapped(Score: Perfect):40,827,379-40,857,860

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv817836	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	40,827,379	40,857,860
nsv817836	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	41,333,284	41,363,765
nsv817836	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000019.8	Chr19	46,025,124	46,055,605

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1416690	copy number loss	NA19119	SNP array	Probe signal intensity	24
nssv1416691	copy number gain	NA19116	SNP array	Probe signal intensity	24
nssv1416692	copy number loss	NA19120	SNP array	Probe signal intensity	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1416690	Remapped	Perfect	NC_000019.10:g.(?_ 40827379)_(4085786 0_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,827,379	40,857,860
nssv1416691	Remapped	Perfect	NC_000019.10:g.(?_ 40827379)_(4085786 0_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,827,379	40,857,860
nssv1416692	Remapped	Perfect	NC_000019.10:g.(?_ 40827379)_(4085786 0_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,827,379	40,857,860
nssv1416690	Remapped	Perfect	NC_000019.9:g.(?_4 1333284)_(41363765 _?)del	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,333,284	41,363,765
nssv1416691	Remapped	Perfect	NC_000019.9:g.(?_4 1333284)_(41363765 _?)dup	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,333,284	41,363,765
nssv1416692	Remapped	Perfect	NC_000019.9:g.(?_4 1333284)_(41363765 _?)del	GRCh37.p13	First Pass	NC_000019.9	Chr19	41,333,284	41,363,765
nssv1416690	Submitted genomic		NC_000019.8:g.(?_4 6025124)_(46055605 _?)del	NCBI35 (hg17)		NC_000019.8	Chr19	46,025,124	46,055,605
nssv1416691	Submitted genomic		NC_000019.8:g.(?_4 6025124)_(46055605 _?)dup	NCBI35 (hg17)		NC_000019.8	Chr19	46,025,124	46,055,605
nssv1416692	Submitted genomic		NC_000019.8:g.(?_4 6025124)_(46055605 _?)del	NCBI35 (hg17)		NC_000019.8	Chr19	46,025,124	46,055,605

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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