nsv817799
- Organism: Homo sapiens
- Study:nstd64 (Wang et al. 2007)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:20,161
- Publication(s):Wang et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 579 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 579 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 21 SVs from 7 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv817799 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 67,629,808 | 67,649,968 |
nsv817799 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 65,297,045 | 65,317,205 |
nsv817799 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000018.8 | Chr18 | 63,448,025 | 63,468,185 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1416261 | copy number loss | NA19141 | SNP array | Probe signal intensity | 31 |
nssv1416408 | copy number gain | NA18856 | SNP array | Probe signal intensity | 34 |
nssv1416409 | copy number loss | NA18855 | SNP array | Probe signal intensity | 53 |
nssv1416682 | copy number loss | NA19119 | SNP array | Probe signal intensity | 24 |
nssv1416685 | copy number loss | NA19120 | SNP array | Probe signal intensity | 20 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv1416261 | Remapped | Perfect | NC_000018.10:g.(?_ 67629808)_(6764996 8_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 67,629,808 | 67,649,968 |
nssv1416408 | Remapped | Perfect | NC_000018.10:g.(?_ 67629808)_(6764996 8_?)dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 67,629,808 | 67,649,968 |
nssv1416409 | Remapped | Perfect | NC_000018.10:g.(?_ 67629808)_(6764996 8_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 67,629,808 | 67,649,968 |
nssv1416682 | Remapped | Perfect | NC_000018.10:g.(?_ 67629808)_(6764996 8_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 67,629,808 | 67,649,968 |
nssv1416685 | Remapped | Perfect | NC_000018.10:g.(?_ 67629808)_(6764996 8_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 67,629,808 | 67,649,968 |
nssv1416261 | Remapped | Perfect | NC_000018.9:g.(?_6 5297045)_(65317205 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 65,297,045 | 65,317,205 |
nssv1416408 | Remapped | Perfect | NC_000018.9:g.(?_6 5297045)_(65317205 _?)dup | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 65,297,045 | 65,317,205 |
nssv1416409 | Remapped | Perfect | NC_000018.9:g.(?_6 5297045)_(65317205 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 65,297,045 | 65,317,205 |
nssv1416682 | Remapped | Perfect | NC_000018.9:g.(?_6 5297045)_(65317205 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 65,297,045 | 65,317,205 |
nssv1416685 | Remapped | Perfect | NC_000018.9:g.(?_6 5297045)_(65317205 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 65,297,045 | 65,317,205 |
nssv1416261 | Submitted genomic | NC_000018.8:g.(?_6 3448025)_(63468185 _?)del | NCBI35 (hg17) | NC_000018.8 | Chr18 | 63,448,025 | 63,468,185 | ||
nssv1416408 | Submitted genomic | NC_000018.8:g.(?_6 3448025)_(63468185 _?)dup | NCBI35 (hg17) | NC_000018.8 | Chr18 | 63,448,025 | 63,468,185 | ||
nssv1416409 | Submitted genomic | NC_000018.8:g.(?_6 3448025)_(63468185 _?)del | NCBI35 (hg17) | NC_000018.8 | Chr18 | 63,448,025 | 63,468,185 | ||
nssv1416682 | Submitted genomic | NC_000018.8:g.(?_6 3448025)_(63468185 _?)del | NCBI35 (hg17) | NC_000018.8 | Chr18 | 63,448,025 | 63,468,185 | ||
nssv1416685 | Submitted genomic | NC_000018.8:g.(?_6 3448025)_(63468185 _?)del | NCBI35 (hg17) | NC_000018.8 | Chr18 | 63,448,025 | 63,468,185 |