nsv817610
- Organism: Homo sapiens
- Study:nstd58 (Forsberg et al. 2012)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:32,441,084
- Publication(s):Forsberg et al. 2012
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 78668 SVs from 137 studies. See in: genome view
Overlapping variant regions from other studies: 78626 SVs from 137 studies. See in: genome view
Overlapping variant regions from other studies: 22249 SVs from 42 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv817610 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 83,487,073 | 83,487,073 | 115,928,156 | 115,928,156 |
| nsv817610 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 82,782,892 | 82,782,892 | 115,263,853 | 115,263,853 |
| nsv817610 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 82,818,648 | 82,821,950 | 115,288,214 | 115,291,752 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis |
|---|---|---|---|---|
| nssv1415554 | copy number loss | TP25-2 | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1415554 | Remapped | Good | NC_000005.10:g.(83 487073_83487073)_( 115928156_11592815 6)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 83,487,073 | 83,487,073 | 115,928,156 | 115,928,156 |
| nssv1415554 | Remapped | Good | NC_000005.9:g.(827 82892_82782892)_(1 15263853_115263853 )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 82,782,892 | 82,782,892 | 115,263,853 | 115,263,853 |
| nssv1415554 | Submitted genomic | NC_000005.8:g.(828 18648_82821950)_(1 15288214_115291752 )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 82,818,648 | 82,821,950 | 115,288,214 | 115,291,752 |