nsv7098710
- Organism: Homo sapiens
- Study:nstd230 (Sugimoto et al. 2023)
- Variant Type:complex chromosomal rearrangement
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 194 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 194 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 185 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 185 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 143 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 143 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 107 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 123 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 126 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 126 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 96 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 96 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 106 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 106 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 299 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 299 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 197 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 197 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 188 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 188 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 145 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 145 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 106 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 107 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 123 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 126 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 126 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 96 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 96 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 106 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 106 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 303 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 303 SVs from 32 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 173,996,428 | 173,996,428 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 173,996,439 | 173,996,439 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 174,566,613 | 174,566,613 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 174,566,617 | 174,566,617 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 175,403,232 | 175,403,232 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 175,403,232 | 175,403,232 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 106,855,079 | 106,855,079 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 107,431,579 | 107,431,579 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 109,037,993 | 109,037,993 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 112,372,417 | 112,372,417 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 113,143,831 | 113,143,831 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 113,143,831 | 113,143,831 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 124,670,185 | 124,670,185 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 124,670,185 | 124,670,185 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 130,221,037 | 130,221,037 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 130,221,039 | 130,221,039 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 141,601,168 | 141,601,168 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 141,601,169 | 141,601,169 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 22,852,338 | 22,852,338 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 22,852,340 | 22,852,340 | + |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 10,071,147 | 10,071,147 | - |
nsv7098710 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 10,071,149 | 10,071,149 | + |
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 173,965,566 | 173,965,566 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 173,965,577 | 173,965,577 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 174,535,751 | 174,535,751 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 174,535,755 | 174,535,755 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 175,372,368 | 175,372,368 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 175,372,368 | 175,372,368 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 107,302,954 | 107,302,954 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 107,752,783 | 107,752,783 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 109,359,196 | 109,359,196 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 112,693,619 | 112,693,619 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 113,465,033 | 113,465,033 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 113,465,033 | 113,465,033 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 124,991,331 | 124,991,331 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 124,991,331 | 124,991,331 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 130,542,182 | 130,542,182 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 130,542,184 | 130,542,184 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 141,922,305 | 141,922,305 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 141,922,306 | 141,922,306 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 22,852,567 | 22,852,567 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 22,852,569 | 22,852,569 | + | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 10,071,147 | 10,071,147 | - | ||
nsv7098710 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 10,071,149 | 10,071,149 | + |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv18792457 | interchromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792458 | interchromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792465 | interchromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792459 | interchromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792464 | interchromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792466 | interchromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792463 | intrachromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792460 | intrachromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792462 | intrachromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792461 | interchromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
nssv18792467 | interchromosomal translocation | FHU17-359 | Sequencing | Sequence alignment | 11 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv18792457 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 173,996,428 | 173,996,428 | + |
nssv18792458 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 173,996,439 | 173,996,439 | + |
nssv18792465 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 174,566,613 | 174,566,613 | - |
nssv18792459 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 174,566,617 | 174,566,617 | + |
nssv18792464 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 175,403,232 | 175,403,232 | + |
nssv18792466 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 175,403,232 | 175,403,232 | - |
nssv18792463 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 22,852,338 | 22,852,338 | - |
nssv18792460 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 22,852,340 | 22,852,340 | + |
nssv18792464 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 106,855,079 | 106,855,079 | + |
nssv18792458 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 107,431,579 | 107,431,579 | - |
nssv18792457 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 109,037,993 | 109,037,993 | + |
nssv18792459 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 112,372,417 | 112,372,417 | + |
nssv18792460 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,143,831 | 113,143,831 | - |
nssv18792462 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,143,831 | 113,143,831 | - |
nssv18792462 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 124,670,185 | 124,670,185 | + |
nssv18792463 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 124,670,185 | 124,670,185 | - |
nssv18792461 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 130,221,037 | 130,221,037 | + |
nssv18792467 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 130,221,039 | 130,221,039 | - |
nssv18792465 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 141,601,168 | 141,601,168 | + |
nssv18792466 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 141,601,169 | 141,601,169 | - |
nssv18792461 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 10,071,147 | 10,071,147 | - |
nssv18792467 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 10,071,149 | 10,071,149 | + |
nssv18792457 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 173,965,566 | 173,965,566 | + | ||
nssv18792458 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 173,965,577 | 173,965,577 | + | ||
nssv18792465 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 174,535,751 | 174,535,751 | - | ||
nssv18792459 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 174,535,755 | 174,535,755 | + | ||
nssv18792464 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 175,372,368 | 175,372,368 | + | ||
nssv18792466 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 175,372,368 | 175,372,368 | - | ||
nssv18792463 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 22,852,567 | 22,852,567 | - | ||
nssv18792460 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 22,852,569 | 22,852,569 | + | ||
nssv18792464 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 107,302,954 | 107,302,954 | + | ||
nssv18792458 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 107,752,783 | 107,752,783 | - | ||
nssv18792457 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 109,359,196 | 109,359,196 | + | ||
nssv18792459 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 112,693,619 | 112,693,619 | + | ||
nssv18792460 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 113,465,033 | 113,465,033 | - | ||
nssv18792462 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 113,465,033 | 113,465,033 | - | ||
nssv18792462 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 124,991,331 | 124,991,331 | + | ||
nssv18792463 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 124,991,331 | 124,991,331 | - | ||
nssv18792461 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 130,542,182 | 130,542,182 | + | ||
nssv18792467 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 130,542,184 | 130,542,184 | - | ||
nssv18792465 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 141,922,305 | 141,922,305 | + | ||
nssv18792466 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 141,922,306 | 141,922,306 | - | ||
nssv18792461 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 10,071,147 | 10,071,147 | - | ||
nssv18792467 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 10,071,149 | 10,071,149 | + |