nsv7098709
- Organism: Homo sapiens
- Study:nstd230 (Sugimoto et al. 2023)
- Variant Type:complex chromosomal rearrangement
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 149 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 149 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 85 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 85 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 196 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 196 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 95 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 95 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 280 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 282 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 72 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 75 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 73 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 73 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 98 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 98 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 149 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 149 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 85 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 85 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 196 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 196 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 95 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 95 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 280 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 282 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 72 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 75 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 71 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 71 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 98 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 98 SVs from 21 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 137,740,158 | 137,740,158 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 137,740,158 | 137,740,158 | - |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 228,275,730 | 228,275,730 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 228,275,732 | 228,275,732 | - |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 229,135,289 | 229,135,289 | - |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 229,135,292 | 229,135,292 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 229,948,571 | 229,948,571 | - |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 229,948,574 | 229,948,574 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 231,705,911 | 231,705,911 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 231,705,911 | 231,705,911 | - |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 231,713,973 | 231,713,973 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 231,713,973 | 231,713,973 | - |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 232,367,019 | 232,367,019 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 232,367,161 | 232,367,161 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 156,218,540 | 156,218,540 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 166,293,601 | 166,293,601 | - |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 77,034,516 | 77,034,516 | - |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 77,034,517 | 77,034,517 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 95,297,050 | 95,297,050 | + |
nsv7098709 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 95,297,057 | 95,297,057 | - |
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 138,497,728 | 138,497,728 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 138,497,728 | 138,497,728 | - | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 229,140,446 | 229,140,446 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 229,140,448 | 229,140,448 | - | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 230,000,005 | 230,000,005 | - | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 230,000,008 | 230,000,008 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 230,813,287 | 230,813,287 | - | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 230,813,290 | 230,813,290 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 232,570,621 | 232,570,621 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 232,570,621 | 232,570,621 | - | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 232,578,683 | 232,578,683 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 232,578,683 | 232,578,683 | - | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 233,231,729 | 233,231,729 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 233,231,871 | 233,231,871 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 155,645,550 | 155,645,550 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 165,720,606 | 165,720,606 | - | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 76,745,560 | 76,745,560 | - | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 76,745,561 | 76,745,561 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 95,030,214 | 95,030,214 | + | ||
nsv7098709 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 95,030,221 | 95,030,221 | - |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv18792441 | intrachromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792448 | intrachromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792449 | intrachromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792446 | interchromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792445 | interchromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792447 | interchromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792442 | intrachromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792443 | intrachromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792450 | interchromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
nssv18792444 | intrachromosomal translocation | FHU17-112 | Sequencing | Sequence alignment | 10 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv18792441 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 137,740,158 | 137,740,158 | + |
nssv18792448 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 137,740,158 | 137,740,158 | - |
nssv18792449 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 228,275,730 | 228,275,730 | + |
nssv18792446 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 228,275,732 | 228,275,732 | - |
nssv18792448 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 229,135,289 | 229,135,289 | - |
nssv18792445 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 229,135,292 | 229,135,292 | + |
nssv18792441 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 229,948,571 | 229,948,571 | - |
nssv18792447 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 229,948,574 | 229,948,574 | + |
nssv18792442 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 231,705,911 | 231,705,911 | + |
nssv18792443 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 231,705,911 | 231,705,911 | - |
nssv18792442 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 231,713,973 | 231,713,973 | + |
nssv18792450 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 231,713,973 | 231,713,973 | - |
nssv18792449 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 232,367,019 | 232,367,019 | + |
nssv18792443 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 232,367,161 | 232,367,161 | + |
nssv18792444 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,218,540 | 156,218,540 | + |
nssv18792444 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 166,293,601 | 166,293,601 | - |
nssv18792447 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 77,034,516 | 77,034,516 | - |
nssv18792445 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 77,034,517 | 77,034,517 | + |
nssv18792446 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 95,297,050 | 95,297,050 | + |
nssv18792450 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 95,297,057 | 95,297,057 | - |
nssv18792441 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 138,497,728 | 138,497,728 | + | ||
nssv18792448 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 138,497,728 | 138,497,728 | - | ||
nssv18792449 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 229,140,446 | 229,140,446 | + | ||
nssv18792446 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 229,140,448 | 229,140,448 | - | ||
nssv18792448 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 230,000,005 | 230,000,005 | - | ||
nssv18792445 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 230,000,008 | 230,000,008 | + | ||
nssv18792441 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 230,813,287 | 230,813,287 | - | ||
nssv18792447 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 230,813,290 | 230,813,290 | + | ||
nssv18792442 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 232,570,621 | 232,570,621 | + | ||
nssv18792443 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 232,570,621 | 232,570,621 | - | ||
nssv18792442 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 232,578,683 | 232,578,683 | + | ||
nssv18792450 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 232,578,683 | 232,578,683 | - | ||
nssv18792449 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 233,231,729 | 233,231,729 | + | ||
nssv18792443 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 233,231,871 | 233,231,871 | + | ||
nssv18792444 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 155,645,550 | 155,645,550 | + | ||
nssv18792444 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 165,720,606 | 165,720,606 | - | ||
nssv18792447 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 76,745,560 | 76,745,560 | - | ||
nssv18792445 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 76,745,561 | 76,745,561 | + | ||
nssv18792446 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 95,030,214 | 95,030,214 | + | ||
nssv18792450 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 95,030,221 | 95,030,221 | - |