nsv7098708
- Organism: Homo sapiens
- Study:nstd230 (Sugimoto et al. 2023)
- Variant Type:complex chromosomal rearrangement
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 121 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 117 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 259 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 259 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 214 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 214 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 187 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 223 SVs from 13 studies. See in: genome view
Overlapping variant regions from other studies: 223 SVs from 13 studies. See in: genome view
Overlapping variant regions from other studies: 231 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 121 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 117 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 265 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 265 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 220 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 220 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 206 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 206 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 187 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 223 SVs from 13 studies. See in: genome view
Overlapping variant regions from other studies: 223 SVs from 13 studies. See in: genome view
Overlapping variant regions from other studies: 231 SVs from 16 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 62,710,082 | 62,710,082 | + |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 63,811,599 | 63,811,599 | - |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 14,648,286 | 14,648,286 | + |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 14,648,286 | 14,648,286 | - |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 18,390,134 | 18,390,134 | + |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 18,390,140 | 18,390,140 | - |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 20,518,298 | 20,518,298 | - |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 20,518,299 | 20,518,299 | + |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 53,690,056 | 53,690,056 | + |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 5,597,978 | 5,597,978 | - |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 5,597,984 | 5,597,984 | + |
nsv7098708 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 61,991,870 | 61,991,870 | - |
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 63,175,753 | 63,175,753 | + | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 64,277,270 | 64,277,270 | - | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 14,648,284 | 14,648,284 | + | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 14,648,284 | 14,648,284 | - | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 18,390,132 | 18,390,132 | + | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 18,390,138 | 18,390,138 | - | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 20,518,296 | 20,518,296 | - | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 20,518,297 | 20,518,297 | + | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 51,216,426 | 51,216,426 | + | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 5,597,977 | 5,597,977 | - | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 5,597,983 | 5,597,983 | + | ||
nsv7098708 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 59,659,103 | 59,659,103 | - |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv18792453 | interchromosomal translocation | FHU17-282 | Sequencing | Sequence alignment | 6 |
nssv18792452 | interchromosomal translocation | FHU17-282 | Sequencing | Sequence alignment | 6 |
nssv18792454 | intrachromosomal translocation | FHU17-282 | Sequencing | Sequence alignment | 6 |
nssv18792455 | interchromosomal translocation | FHU17-282 | Sequencing | Sequence alignment | 6 |
nssv18792451 | interchromosomal translocation | FHU17-282 | Sequencing | Sequence alignment | 6 |
nssv18792456 | intrachromosomal translocation | FHU17-282 | Sequencing | Sequence alignment | 6 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv18792453 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 62,710,082 | 62,710,082 | + |
nssv18792452 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 63,811,599 | 63,811,599 | - |
nssv18792453 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 14,648,286 | 14,648,286 | - |
nssv18792454 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 14,648,286 | 14,648,286 | + |
nssv18792455 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 18,390,134 | 18,390,134 | + |
nssv18792451 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 18,390,140 | 18,390,140 | - |
nssv18792454 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 20,518,298 | 20,518,298 | - |
nssv18792452 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 20,518,299 | 20,518,299 | + |
nssv18792455 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 5,597,978 | 5,597,978 | - |
nssv18792451 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 5,597,984 | 5,597,984 | + |
nssv18792456 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 53,690,056 | 53,690,056 | + |
nssv18792456 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 61,991,870 | 61,991,870 | - |
nssv18792453 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 63,175,753 | 63,175,753 | + | ||
nssv18792452 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 64,277,270 | 64,277,270 | - | ||
nssv18792453 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 14,648,284 | 14,648,284 | - | ||
nssv18792454 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 14,648,284 | 14,648,284 | + | ||
nssv18792455 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 18,390,132 | 18,390,132 | + | ||
nssv18792451 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 18,390,138 | 18,390,138 | - | ||
nssv18792454 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 20,518,296 | 20,518,296 | - | ||
nssv18792452 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 20,518,297 | 20,518,297 | + | ||
nssv18792455 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 5,597,977 | 5,597,977 | - | ||
nssv18792451 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 5,597,983 | 5,597,983 | + | ||
nssv18792456 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 51,216,426 | 51,216,426 | + | ||
nssv18792456 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 59,659,103 | 59,659,103 | - |