nsv7098707
- Organism: Homo sapiens
- Study:nstd230 (Sugimoto et al. 2023)
- Variant Type:complex chromosomal rearrangement
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 119 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 119 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 120 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 159 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 359 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 359 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 429 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 429 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 6 SVs from 5 studies. See in: genome view
Overlapping variant regions from other studies: 6 SVs from 5 studies. See in: genome view
Overlapping variant regions from other studies: 119 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 119 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 120 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 159 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 359 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 359 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 429 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 429 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 24 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 17,955,071 | 17,955,071 | + |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 17,955,072 | 17,955,072 | - |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 55,757,575 | 55,757,575 | + |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 55,757,575 | 55,757,575 | - |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 109,330,068 | 109,330,068 | + |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 115,924,901 | 115,924,901 | - |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 77,013,041 | 77,013,041 | + |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 77,013,041 | 77,013,041 | - |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 79,484,456 | 79,484,456 | + |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 79,484,456 | 79,484,456 | - |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000021.9 | Chr21 | 18,818,771 | 18,818,771 | - |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000021.9 | Chr21 | 18,818,773 | 18,818,773 | + |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187541.1 | Chr4|NT_18 7541.1 | 83,764 | 83,764 | + |
nsv7098707 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187541.1 | Chr4|NT_18 7541.1 | 83,764 | 83,764 | - |
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 17,956,694 | 17,956,694 | + | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 17,956,695 | 17,956,695 | - | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 56,623,741 | 56,623,741 | + | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 56,623,741 | 56,623,741 | - | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 108,665,769 | 108,665,769 | + | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 115,260,598 | 115,260,598 | - | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 74,724,997 | 74,724,997 | + | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 74,724,997 | 74,724,997 | - | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 77,244,456 | 77,244,456 | + | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 77,244,456 | 77,244,456 | - | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000021.8 | Chr21 | 20,191,089 | 20,191,089 | - | ||
nsv7098707 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000021.8 | Chr21 | 20,191,091 | 20,191,091 | + |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv18792435 | intrachromosomal translocation | FHU15-242 | Sequencing | Sequence alignment | 6 |
nssv18792436 | interchromosomal translocation | FHU15-242 | Sequencing | Sequence alignment | 6 |
nssv18792440 | interchromosomal translocation | FHU15-242 | Sequencing | Sequence alignment | 6 |
nssv18792438 | intrachromosomal translocation | FHU15-242 | Sequencing | Sequence alignment | 6 |
nssv18792437 | intrachromosomal translocation | FHU15-242 | Sequencing | Sequence alignment | 6 |
nssv18792439 | interchromosomal translocation | FHU15-242 | Sequencing | Sequence alignment | 6 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv18792435 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187541.1 | Chr4|NT_18 7541.1 | 83,764 | 83,764 | - |
nssv18792436 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187541.1 | Chr4|NT_18 7541.1 | 83,764 | 83,764 | + |
nssv18792440 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 17,955,071 | 17,955,071 | + |
nssv18792435 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 17,955,072 | 17,955,072 | - |
nssv18792435 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 55,757,575 | 55,757,575 | - |
nssv18792436 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 55,757,575 | 55,757,575 | + |
nssv18792438 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 109,330,068 | 109,330,068 | + |
nssv18792438 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 115,924,901 | 115,924,901 | - |
nssv18792437 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 77,013,041 | 77,013,041 | - |
nssv18792439 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 77,013,041 | 77,013,041 | + |
nssv18792436 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 79,484,456 | 79,484,456 | + |
nssv18792437 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 79,484,456 | 79,484,456 | - |
nssv18792439 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 18,818,771 | 18,818,771 | - |
nssv18792440 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 18,818,773 | 18,818,773 | + |
nssv18792440 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 17,956,694 | 17,956,694 | + | ||
nssv18792435 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 17,956,695 | 17,956,695 | - | ||
nssv18792435 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 56,623,741 | 56,623,741 | - | ||
nssv18792436 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 56,623,741 | 56,623,741 | + | ||
nssv18792438 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 108,665,769 | 108,665,769 | + | ||
nssv18792438 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 115,260,598 | 115,260,598 | - | ||
nssv18792437 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 74,724,997 | 74,724,997 | - | ||
nssv18792439 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 74,724,997 | 74,724,997 | + | ||
nssv18792436 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 77,244,456 | 77,244,456 | + | ||
nssv18792437 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 77,244,456 | 77,244,456 | - | ||
nssv18792439 | Submitted genomic | GRCh37 (hg19) | NC_000021.8 | Chr21 | 20,191,089 | 20,191,089 | - | ||
nssv18792440 | Submitted genomic | GRCh37 (hg19) | NC_000021.8 | Chr21 | 20,191,091 | 20,191,091 | + |