nsv6635140
- Organism: Homo sapiens
- Study:nstd227 (Kikas et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,510
- Publication(s):Kikas et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 542 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 542 SVs from 77 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6635140 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nsv6635140 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18327564 | deletion | SNP array | Probe signal intensity |
| nssv18327565 | deletion | SNP array | Probe signal intensity |
| nssv18327566 | deletion | SNP array | Probe signal intensity |
| nssv18327567 | deletion | SNP array | Probe signal intensity |
| nssv18327568 | deletion | SNP array | Probe signal intensity |
| nssv18327570 | deletion | SNP array | Probe signal intensity |
| nssv18327571 | deletion | SNP array | Probe signal intensity |
| nssv18327572 | deletion | SNP array | Probe signal intensity |
| nssv18327573 | duplication | SNP array | Probe signal intensity |
| nssv18327574 | duplication | SNP array | Probe signal intensity |
| nssv18327575 | duplication | SNP array | Probe signal intensity |
| nssv18327576 | duplication | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18327564 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327565 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327566 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327567 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327568 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327570 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327571 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327572 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327573 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327574 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327575 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327576 | Remapped | Perfect | NC_000016.10:g.(28 603922_?)_(?_28609 431)dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,603,922 | 28,609,431 |
| nssv18327564 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327565 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327566 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327567 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327568 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327570 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327571 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327572 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327573 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)dup | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327574 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)dup | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327575 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)dup | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 | ||
| nssv18327576 | Submitted genomic | NC_000016.9:g.(286 15243_?)_(?_286207 52)dup | GRCh37 (hg19) | NC_000016.9 | Chr16 | 28,615,243 | 28,620,752 |