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dbVar

Database of genomic structural variation

nsv6299

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:insertion
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:58,867

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 195 SVs from 29 studies. See in: genome view

Remapped(Score: Perfect):33,214,316-33,273,182

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv6299	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	33,214,316	33,273,182
nsv6299	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	33,503,244	33,562,110
nsv6299	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000010.8	Chr10	33,543,250	33,602,116

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv10748	insertion	NA18956	Sequencing	Paired-end mapping	905
nssv3871	insertion	NA12878	Sequencing	Paired-end mapping	1,451

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv10748	Remapped	Perfect	NC_000010.11:g.(33 214316_?)_(?_33246 294)ins7522	GRCh38.p12	First Pass	NC_000010.11	Chr10	33,214,316	33,246,294
nssv3871	Remapped	Perfect	NC_000010.11:g.(33 242595_?)_(?_33273 182)ins9161	GRCh38.p12	First Pass	NC_000010.11	Chr10	33,242,595	33,273,182
nssv10748	Remapped	Perfect	NC_000010.10:g.(33 503244_?)_(?_33535 222)ins7522	GRCh37.p13	First Pass	NC_000010.10	Chr10	33,503,244	33,535,222
nssv3871	Remapped	Perfect	NC_000010.10:g.(33 531523_?)_(?_33562 110)ins9161	GRCh37.p13	First Pass	NC_000010.10	Chr10	33,531,523	33,562,110
nssv10748	Submitted genomic		NC_000010.8:g.(335 43250_?)_(?_335752 28)ins7522	NCBI35 (hg17)		NC_000010.8	Chr10	33,543,250	33,575,228
nssv3871	Submitted genomic		NC_000010.8:g.(335 71529_?)_(?_336021 16)ins9161	NCBI35 (hg17)		NC_000010.8	Chr10	33,571,529	33,602,116

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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