nsv5728530
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a HERV mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 126 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 27 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5728530 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000019.10 | Chr19 | 55,060,329 | 55,060,329 | ||
| nsv5728530 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004166865.1 | Chr19|NW_0 04166865.1 | 1,034,697 | 1,034,697 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17216707 | herv insertion | Sequencing | Other |
| nssv17219217 | herv insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17216707 | Submitted genomic | NC_000019.10:g.550 60329_55060330ins8 713 | GRCh38 (hg38) | NC_000019.10 | Chr19 | 55,060,329 | 55,060,329 | ||
| nssv17219217 | Submitted genomic | NC_000019.10:g.550 60329_55060330ins8 157 | GRCh38 (hg38) | NC_000019.10 | Chr19 | 55,060,329 | 55,060,329 | ||
| nssv17216707 | Remapped | Perfect | NW_004166865.1:g.1 034697_1034698ins8 713 | GRCh37.p13 | First Pass | NW_004166865.1 | Chr19|NW_0 04166865.1 | 1,034,697 | 1,034,697 |
| nssv17219217 | Remapped | Perfect | NW_004166865.1:g.1 034697_1034698ins8 157 | GRCh37.p13 | First Pass | NW_004166865.1 | Chr19|NW_0 04166865.1 | 1,034,697 | 1,034,697 |