nsv5714274
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a HERV mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 533 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5714274 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 146,381,606 | 146,381,606 | ||
| nsv5714274 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 3,197,019 | 3,197,019 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17215557 | herv insertion | Sequencing | Other |
| nssv17232446 | herv insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17215557 | Submitted genomic | NC_000001.11:g.146 381606_146381607in s8730 | GRCh38 (hg38) | NC_000001.11 | Chr1 | 146,381,606 | 146,381,606 | ||
| nssv17232446 | Submitted genomic | NC_000001.11:g.146 381606_146381607in s8725 | GRCh38 (hg38) | NC_000001.11 | Chr1 | 146,381,606 | 146,381,606 | ||
| nssv17215557 | Remapped | Perfect | NW_003871055.3:g.3 197019_3197020ins8 730 | GRCh37.p13 | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 3,197,019 | 3,197,019 |
| nssv17232446 | Remapped | Perfect | NW_003871055.3:g.3 197019_3197020ins8 725 | GRCh37.p13 | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 3,197,019 | 3,197,019 |