nsv5531121
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:8,034
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 129 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 129 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5531121 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000015.10 | Chr15 | 88,538,033 | 88,546,066 | ||
| nsv5531121 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 89,081,264 | 89,089,297 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17705526 | deletion | Sequencing | Sequence alignment |
| nssv17705527 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17705526 | Submitted genomic | NC_000015.10:g.885 38033_88546066del | GRCh38 (hg38) | NC_000015.10 | Chr15 | 88,538,033 | 88,546,066 | ||
| nssv17705527 | Submitted genomic | NC_000015.10:g.885 38033_88546066dup | GRCh38 (hg38) | NC_000015.10 | Chr15 | 88,538,033 | 88,546,066 | ||
| nssv17705526 | Remapped | Perfect | NC_000015.9:g.8908 1264_89089297del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 89,081,264 | 89,089,297 |
| nssv17705527 | Remapped | Perfect | NC_000015.9:g.8908 1264_89089297dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 89,081,264 | 89,089,297 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17705526 | <0.001 | 2 | 6400 |
| nssv17705527 | <0.001 | 5 | 6400 |