nsv5473916
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,001
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 156 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 156 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5473916 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000006.12 | Chr6 | 18,754,000 | 18,760,000 | ||
| nsv5473916 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 18,754,231 | 18,760,231 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16980054 | deletion | Sequencing | Sequence alignment |
| nssv16980055 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16980054 | Submitted genomic | NC_000006.12:g.187 54000_18760000del | GRCh38 (hg38) | NC_000006.12 | Chr6 | 18,754,000 | 18,760,000 | ||
| nssv16980055 | Submitted genomic | NC_000006.12:g.187 54000_18760000dup | GRCh38 (hg38) | NC_000006.12 | Chr6 | 18,754,000 | 18,760,000 | ||
| nssv16980054 | Remapped | Perfect | NC_000006.11:g.187 54231_18760231del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 18,754,231 | 18,760,231 |
| nssv16980055 | Remapped | Perfect | NC_000006.11:g.187 54231_18760231dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 18,754,231 | 18,760,231 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16980054 | 0.002 | 10 | 6370 |
| nssv16980055 | 0.009 | 54 | 6204 |