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dbVar

Database of genomic structural variation

nsv5393687

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:6,114

Description:nsv4883421 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 180 SVs from 28 studies. See in: genome view

Remapped(Score: Perfect):15,906,440-15,912,553

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5393687	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	15,906,440	15,912,553
nsv5393687	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	15,906,549	15,912,662

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16885062	line1 deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16885062	Remapped	Perfect	NC_000005.10:g.159 06440_15912553del	GRCh38.p12	First Pass	NC_000005.10	Chr5	15,906,440	15,912,553
nssv16885062	Submitted genomic		NC_000005.9:g.1590 6549_15912662del	GRCh37 (hg19)		NC_000005.9	Chr5	15,906,549	15,912,662

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16885062	0.01	172	16834

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