nsv5393469
- Organism: Homo sapiens
- Study:nstd186 (NCBI Curated Common Structural Variants)
- Variant Type:mobile element deletion
- Method Type:Curated
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,231
- Description:nsv5036275 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 148 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 148 SVs from 49 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5393469 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 19,764,893 | 19,771,123 |
nsv5393469 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 19,765,124 | 19,771,354 |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv16875331 | line1 deletion | Curated | Curated |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16875331 | Remapped | Perfect | NC_000006.12:g.197 64893_19771123del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 19,764,893 | 19,771,123 |
nssv16875331 | Submitted genomic | NC_000006.11:g.197 65124_19771354del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 19,765,124 | 19,771,354 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
---|---|---|---|
nssv16875331 | 0.541 | 15834 | 29246 |