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dbVar

Database of genomic structural variation

nsv5393461

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,807

Description:nsv5038917 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 117 SVs from 51 studies. See in: genome view

Remapped(Score: Perfect):24,832,212-24,835,018

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5393461	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	24,832,212	24,835,018
nsv5393461	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	25,158,703	25,161,509

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16886199	sva deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16886199	Remapped	Perfect	NC_000001.11:g.248 32212_24835018del	GRCh38.p12	First Pass	NC_000001.11	Chr1	24,832,212	24,835,018
nssv16886199	Submitted genomic		NC_000001.10:g.251 58703_25161509del	GRCh37 (hg19)		NC_000001.10	Chr1	25,158,703	25,161,509

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16886199	0.929	27163	29246

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