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dbVar

Database of genomic structural variation

nsv5382209

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:380

Description:nsv4787533 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 237 SVs from 51 studies. See in: genome view

Remapped(Score: Perfect):111,155,969-111,156,348

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5382209	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	111,155,969	111,156,348
nsv5382209	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000008.10	Chr8	112,168,198	112,168,577

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16878387	alu deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16878387	Remapped	Perfect	NC_000008.11:g.111 155969_111156348de l	GRCh38.p12	First Pass	NC_000008.11	Chr8	111,155,969	111,156,348
nssv16878387	Submitted genomic		NC_000008.10:g.112 168198_112168577de l	GRCh37 (hg19)		NC_000008.10	Chr8	112,168,198	112,168,577

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16878387	0.483	8122	16834

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