nsv516038
- Organism: Homo sapiens
- Study:nstd21 (Shaikh et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:18
- Validation:Not tested
- Clinical Assertions: No
- Region Size:112,309
- Publication(s):Shaikh et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 635 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 635 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 31 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv516038 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 55,121,748 | 55,234,056 |
| nsv516038 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 56,881,508 | 56,993,816 |
| nsv516038 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000010.8 | Chr10 | 56,551,514 | 56,663,822 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Zygosity |
|---|---|---|---|---|
| nssv676481 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv665859 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv703673 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv701222 | copy number gain | SNP array | SNP genotyping analysis | |
| nssv685192 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv655727 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv659956 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv668002 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv672978 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv676102 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv681072 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv684388 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv684560 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv688987 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv689325 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv693892 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv679792 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv684982 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv676481 | Remapped | Perfect | NC_000010.11:g.(?_ 55121748)_(5521548 9_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,121,748 | 55,215,489 |
| nssv665859 | Remapped | Perfect | NC_000010.11:g.(?_ 55127160)_(5521548 9_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,127,160 | 55,215,489 |
| nssv703673 | Remapped | Perfect | NC_000010.11:g.(?_ 55161079)_(5518747 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,161,079 | 55,187,470 |
| nssv701222 | Remapped | Perfect | NC_000010.11:g.(?_ 55167660)_(5517786 6_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,167,660 | 55,177,866 |
| nssv685192 | Remapped | Perfect | NC_000010.11:g.(?_ 55187470)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,187,470 | 55,234,056 |
| nssv655727 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv659956 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv668002 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv672978 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv676102 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv681072 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv684388 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv684560 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv688987 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv689325 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv693892 | Remapped | Perfect | NC_000010.11:g.(?_ 55204437)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,204,437 | 55,234,056 |
| nssv679792 | Remapped | Perfect | NC_000010.11:g.(?_ 55210251)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,210,251 | 55,234,056 |
| nssv684982 | Remapped | Perfect | NC_000010.11:g.(?_ 55210251)_(5523405 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,210,251 | 55,234,056 |
| nssv676481 | Remapped | Perfect | NC_000010.10:g.(?_ 56881508)_(5697524 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,881,508 | 56,975,249 |
| nssv665859 | Remapped | Perfect | NC_000010.10:g.(?_ 56886920)_(5697524 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,886,920 | 56,975,249 |
| nssv703673 | Remapped | Perfect | NC_000010.10:g.(?_ 56920839)_(5694723 0_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,920,839 | 56,947,230 |
| nssv701222 | Remapped | Perfect | NC_000010.10:g.(?_ 56927420)_(5693762 6_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,927,420 | 56,937,626 |
| nssv685192 | Remapped | Perfect | NC_000010.10:g.(?_ 56947230)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,947,230 | 56,993,816 |
| nssv655727 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv659956 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv668002 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv672978 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv676102 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv681072 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv684388 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv684560 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv688987 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv689325 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv693892 | Remapped | Perfect | NC_000010.10:g.(?_ 56964197)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,964,197 | 56,993,816 |
| nssv679792 | Remapped | Perfect | NC_000010.10:g.(?_ 56970011)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,970,011 | 56,993,816 |
| nssv684982 | Remapped | Perfect | NC_000010.10:g.(?_ 56970011)_(5699381 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,970,011 | 56,993,816 |
| nssv676481 | Submitted genomic | NC_000010.8:g.(?_5 6551514)_(56645255 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,551,514 | 56,645,255 | ||
| nssv665859 | Submitted genomic | NC_000010.8:g.(?_5 6556926)_(56645255 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,556,926 | 56,645,255 | ||
| nssv703673 | Submitted genomic | NC_000010.8:g.(?_5 6590845)_(56617236 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,590,845 | 56,617,236 | ||
| nssv701222 | Submitted genomic | NC_000010.8:g.(?_5 6597426)_(56607632 _?)dup | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,597,426 | 56,607,632 | ||
| nssv685192 | Submitted genomic | NC_000010.8:g.(?_5 6617236)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,617,236 | 56,663,822 | ||
| nssv655727 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv659956 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv668002 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv672978 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv676102 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv681072 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv684388 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv684560 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv688987 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv689325 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv693892 | Submitted genomic | NC_000010.8:g.(?_5 6634203)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,634,203 | 56,663,822 | ||
| nssv679792 | Submitted genomic | NC_000010.8:g.(?_5 6640017)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,640,017 | 56,663,822 | ||
| nssv684982 | Submitted genomic | NC_000010.8:g.(?_5 6640017)_(56663822 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,640,017 | 56,663,822 |