nsv515150
- Organism: Homo sapiens
- Study:nstd46 (Campbell et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:21,849
- Publication(s):Campbell et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 351 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 354 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 134 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv515150 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nsv515150 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nsv515150 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2975392 | copy number loss | NA10831 | Oligo aCGH | Probe signal intensity | 1 | 452 |
| nssv2975393 | copy number gain | NA11994 | Oligo aCGH | Probe signal intensity | 3 | 500 |
| nssv2975394 | copy number loss | NA12155 | Oligo aCGH | Probe signal intensity | 1 | 468 |
| nssv2975395 | copy number gain | NA12248 | Oligo aCGH | Probe signal intensity | 3 | 494 |
| nssv2975396 | copy number gain | NA18862 | Oligo aCGH | Probe signal intensity | 3 | 485 |
| nssv2975397 | copy number gain | NA18863 | Oligo aCGH | Probe signal intensity | 3 | 474 |
| nssv2975398 | copy number loss | NA18910 | Oligo aCGH | Probe signal intensity | 1 | 474 |
| nssv2975399 | copy number loss | NA18952 | Oligo aCGH | Probe signal intensity | 1 | 459 |
| nssv2975400 | copy number gain | NA18953 | Oligo aCGH | Probe signal intensity | 3 | 463 |
| nssv2975401 | copy number gain | NA19140 | Oligo aCGH | Probe signal intensity | 3 | 446 |
| nssv2975402 | copy number gain | NA19235 | Oligo aCGH | Probe signal intensity | 3 | 458 |
| nssv2975403 | copy number loss | NA21524 | Oligo aCGH | Probe signal intensity | 1 | 456 |
| nssv2975404 | copy number loss | NA21525 | Oligo aCGH | Probe signal intensity | 1 | 483 |
| nssv2975405 | copy number loss | NA21526 | Oligo aCGH | Probe signal intensity | 1 | 451 |
| nssv2975406 | copy number loss | NA21635 | Oligo aCGH | Probe signal intensity | 1 | 429 |
| nssv2975407 | copy number gain | NA21648 | Oligo aCGH | Probe signal intensity | 3 | 473 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2975392 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975393 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975394 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975395 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975396 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975397 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975398 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975399 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975400 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975401 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975402 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975403 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975404 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975405 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975406 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975407 | Remapped | Perfect | NC_000009.12:g.(?_ 69483656)_(6950550 4_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 69,483,656 | 69,505,504 |
| nssv2975392 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975393 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975394 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975395 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975396 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975397 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975398 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975399 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975400 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975401 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975402 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975403 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975404 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975405 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975406 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975407 | Remapped | Perfect | NC_000009.11:g.(?_ 72098572)_(7212042 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 72,098,572 | 72,120,420 |
| nssv2975392 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975393 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975394 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975395 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975396 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975397 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975398 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975399 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975400 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975401 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975402 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975403 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975404 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975405 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975406 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 | ||
| nssv2975407 | Submitted genomic | NC_000009.10:g.(?_ 71288392)_(7131024 0_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 71,288,392 | 71,310,240 |