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dbVar

Database of genomic structural variation

nsv514185

Organism: Homo sapiens

Study:nstd46 (Campbell et al. 2011)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:40,465

Publication(s):Campbell et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 404 SVs from 69 studies. See in: genome view

Remapped(Score: Perfect):165,323,710-165,364,174

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv514185	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	165,323,710	165,364,174
nsv514185	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	165,041,498	165,081,962
nsv514185	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	166,524,192	166,564,656

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2893016	copy number loss	NA10859	Oligo aCGH	Probe signal intensity	1	453
nssv2893017	copy number loss	NA11830	Oligo aCGH	Probe signal intensity	1	465
nssv2893018	copy number loss	NA11881	Oligo aCGH	Probe signal intensity	1	487
nssv2893019	copy number loss	NA11894	Oligo aCGH	Probe signal intensity	1	438
nssv2893020	copy number loss	NA12264	Oligo aCGH	Probe signal intensity	1	480
nssv2893021	copy number loss	NA12748	Oligo aCGH	Probe signal intensity	1	474

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2893016	Remapped	Perfect	NC_000003.12:g.(?_ 165323710)_(165364 174_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	165,323,710	165,364,174
nssv2893017	Remapped	Perfect	NC_000003.12:g.(?_ 165323710)_(165364 174_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	165,323,710	165,364,174
nssv2893018	Remapped	Perfect	NC_000003.12:g.(?_ 165323710)_(165364 174_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	165,323,710	165,364,174
nssv2893019	Remapped	Perfect	NC_000003.12:g.(?_ 165323710)_(165364 174_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	165,323,710	165,364,174
nssv2893020	Remapped	Perfect	NC_000003.12:g.(?_ 165323710)_(165364 174_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	165,323,710	165,364,174
nssv2893021	Remapped	Perfect	NC_000003.12:g.(?_ 165323710)_(165364 174_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	165,323,710	165,364,174
nssv2893016	Remapped	Perfect	NC_000003.11:g.(?_ 165041498)_(165081 962_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	165,041,498	165,081,962
nssv2893017	Remapped	Perfect	NC_000003.11:g.(?_ 165041498)_(165081 962_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	165,041,498	165,081,962
nssv2893018	Remapped	Perfect	NC_000003.11:g.(?_ 165041498)_(165081 962_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	165,041,498	165,081,962
nssv2893019	Remapped	Perfect	NC_000003.11:g.(?_ 165041498)_(165081 962_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	165,041,498	165,081,962
nssv2893020	Remapped	Perfect	NC_000003.11:g.(?_ 165041498)_(165081 962_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	165,041,498	165,081,962
nssv2893021	Remapped	Perfect	NC_000003.11:g.(?_ 165041498)_(165081 962_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	165,041,498	165,081,962
nssv2893016	Submitted genomic		NC_000003.10:g.(?_ 166524192)_(166564 656_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	166,524,192	166,564,656
nssv2893017	Submitted genomic		NC_000003.10:g.(?_ 166524192)_(166564 656_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	166,524,192	166,564,656
nssv2893018	Submitted genomic		NC_000003.10:g.(?_ 166524192)_(166564 656_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	166,524,192	166,564,656
nssv2893019	Submitted genomic		NC_000003.10:g.(?_ 166524192)_(166564 656_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	166,524,192	166,564,656
nssv2893020	Submitted genomic		NC_000003.10:g.(?_ 166524192)_(166564 656_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	166,524,192	166,564,656
nssv2893021	Submitted genomic		NC_000003.10:g.(?_ 166524192)_(166564 656_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	166,524,192	166,564,656

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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