nsv511234
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:39,852
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 503 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 503 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 183 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511234 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 195,951,024 | 195,969,894 | 195,989,825 | 195,990,875 |
| nsv511234 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 195,677,895 | 195,696,765 | 195,716,696 | 195,717,746 |
| nsv511234 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 197,162,292 | 197,181,162 | 197,201,093 | 197,202,143 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv624500 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv624500 | Remapped | Perfect | NC_000003.12:g.(19 5951024_195969894) _(195989825_195990 875)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 195,951,024 | 195,969,894 | 195,989,825 | 195,990,875 |
| nssv624500 | Remapped | Perfect | NC_000003.11:g.(19 5677895_195696765) _(195716696_195717 746)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 195,677,895 | 195,696,765 | 195,716,696 | 195,717,746 |
| nssv624500 | Submitted genomic | NC_000003.10:g.(19 7162292_197181162) _(197201093_197202 143)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 197,162,292 | 197,181,162 | 197,201,093 | 197,202,143 |