nsv510954
- Organism: Homo sapiens
- Study:nstd49 (Teague et al. 2010)
- Variant Type:complex substitution
- Method Type:Optical mapping
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:32,954
- Publication(s):Teague et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 420 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 78 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 420 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 11 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv510954 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 170,372,434 | 170,396,066 |
| nsv510954 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187553.1 | Chr6|NT_18 7553.1 | 99,674 | 132,627 |
| nsv510954 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 170,681,522 | 170,705,154 |
| nsv510954 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000006.9 | Chr6 | 170,599,154 | 170,622,786 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|---|---|
| nssv618656 | complex substitution | CHM | Optical mapping | Optical mapping | Hydatidiform Mole | not provided | Submitter | 1,350 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|
| nssv618656 | Remapped | Pass | GRCh38.p12 | Second Pass | NT_187553.1 | Chr6|NT_18 7553.1 | 99,674 | 132,627 |
| nssv618656 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 170,372,434 | 170,396,066 |
| nssv618656 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 170,681,522 | 170,705,154 |
| nssv618656 | Submitted genomic | NCBI35 (hg17) | NC_000006.9 | Chr6 | 170,599,154 | 170,622,786 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | Sample ID | Type | Subject Phenotype | Clinical Interpretation | Source of Interpretation | Gender | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|---|
| nssv618656 | CHM | complex substitution | Hydatidiform Mole | not provided | Submitter | Female | 1,350 |