nsv510566
- Organism: Homo sapiens
- Study:nstd49 (Teague et al. 2010)
- Variant Type:sequence alteration
- Method Type:Optical mapping
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:6,001
- Publication(s):Teague et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 530 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 521 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 66 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 28 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv510566 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 149,687,954 | 149,693,954 |
| nsv510566 | Remapped | Good | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 148,769,620 | 148,775,614 |
| nsv510566 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,212,352 | 5,218,352 |
| nsv510566 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 148,496,644 | 148,502,644 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|---|---|
| nssv618489 | sequence alteration | CHM | Optical mapping | Optical mapping | Hydatidiform Mole | not provided | Submitter | 1,350 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|
| nssv618489 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 149,687,954 | 149,693,954 |
| nssv618489 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,212,352 | 5,218,352 |
| nssv618489 | Remapped | Good | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 148,769,620 | 148,775,614 |
| nssv618489 | Submitted genomic | NCBI35 (hg17) | NC_000023.8 | ChrX | 148,496,644 | 148,502,644 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | Sample ID | Type | Subject Phenotype | Clinical Interpretation | Source of Interpretation | Gender | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|---|
| nssv618489 | CHM | sequence alteration | Hydatidiform Mole | not provided | Submitter | Female | 1,350 |