nsv5
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:42,759
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 227 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 227 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 4 SVs from 4 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 96,822,040 | 96,864,798 |
| nsv5 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 96,451,352 | 96,494,110 |
| nsv5 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000007.11 | Chr7 | 96,096,003 | 96,138,761 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv5 | deletion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv5 | Remapped | Perfect | NC_000007.14:g.(96 822040_?)_(?_96864 798)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 96,822,040 | 96,864,798 |
| nssv5 | Remapped | Perfect | NC_000007.13:g.(96 451352_?)_(?_96494 110)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 96,451,352 | 96,494,110 |
| nssv5 | Submitted genomic | NC_000007.11:g.(96 096003_?)_(?_96138 761)del9140 | NCBI35 (hg17) | NC_000007.11 | Chr7 | 96,096,003 | 96,138,761 |