Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv482970

Organism: Homo sapiens

Study:nstd41 (Iafrate et al. 2004)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:157,441

Publication(s):Iafrate et al. 2004

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 713 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):177,555,081-177,712,521

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv482970	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nsv482970	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	177,272,869	177,430,309

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv2995928	copy number loss	BAC aCGH	Probe signal intensity
nssv2995956	copy number loss	BAC aCGH	Probe signal intensity
nssv2996044	copy number loss	BAC aCGH	Probe signal intensity
nssv2996093	copy number loss	BAC aCGH	Probe signal intensity
nssv2996142	copy number loss	BAC aCGH	Probe signal intensity
nssv2996235	copy number gain	BAC aCGH	Probe signal intensity
nssv2996274	copy number loss	BAC aCGH	Probe signal intensity
nssv2996275	copy number loss	BAC aCGH	Probe signal intensity
nssv2996490	copy number loss	BAC aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2995928	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2995956	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2996044	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2996093	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2996142	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2996235	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2996274	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2996275	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2996490	Remapped	Perfect	NC_000003.12:g.(?_ 177555081)_(177712 521_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	177,555,081	177,712,521
nssv2995928	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309
nssv2995956	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309
nssv2996044	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309
nssv2996093	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309
nssv2996142	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309
nssv2996235	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309
nssv2996274	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309
nssv2996275	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309
nssv2996490	Submitted genomic		NC_000003.11:g.(?_ 177272869)_(177430 309_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	177,272,869	177,430,309

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI