nsv471659
- Organism: Homo sapiens
- Study:nstd32 (Sharp et al. 2005)
- Variant Type:copy number variation
- Method Type:BAC aCGH
- Submitted on:NCBI34 (hg16)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:97,147
- Publication(s):Sharp et al. 2005
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 803 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 457 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 4 SVs from 2 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv471659 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,747,160 |
| nsv471659 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 46,287,856 | 46,454,477 |
| nsv471659 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | GPC_000000201.1 | Chr9 | 43,553,554 | 43,720,175 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv548937 | copy number loss | GM10970 | BAC aCGH | Probe signal intensity | 55 |
| nssv548938 | copy number loss | GM10976 | BAC aCGH | Probe signal intensity | 56 |
| nssv548939 | copy number loss | GM10979 | BAC aCGH | Probe signal intensity | 65 |
| nssv548940 | copy number loss | GM11523 | BAC aCGH | Probe signal intensity | 54 |
| nssv548941 | copy number loss | GM15726 | BAC aCGH | Probe signal intensity | 41 |
| nssv548942 | copy number loss | GM15727 | BAC aCGH | Probe signal intensity | 44 |
| nssv548943 | copy number loss | GM15732 | BAC aCGH | Probe signal intensity | 56 |
| nssv548944 | copy number loss | GM15733 | BAC aCGH | Probe signal intensity | 51 |
| nssv548945 | copy number loss | GM16688 | BAC aCGH | Probe signal intensity | 44 |
| nssv548946 | copy number gain | JK1058B | BAC aCGH | Probe signal intensity | 61 |
| nssv550439 | copy number loss | GM10970 | BAC aCGH | Probe signal intensity | 55 |
| nssv550440 | copy number loss | GM10976 | BAC aCGH | Probe signal intensity | 56 |
| nssv550441 | copy number loss | GM10979 | BAC aCGH | Probe signal intensity | 65 |
| nssv550442 | copy number loss | GM15724 | BAC aCGH | Probe signal intensity | 41 |
| nssv550443 | copy number loss | GM15727 | BAC aCGH | Probe signal intensity | 44 |
| nssv550444 | copy number loss | GM16688 | BAC aCGH | Probe signal intensity | 44 |
| nssv550445 | copy number gain | JK1058B | BAC aCGH | Probe signal intensity | 61 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv548937 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548938 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548939 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548940 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548941 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548942 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548943 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548944 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548945 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv548946 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4173608 5_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,736,085 |
| nssv550439 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4174716 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,747,160 |
| nssv550440 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4174716 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,747,160 |
| nssv550441 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4174716 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,747,160 |
| nssv550442 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4174716 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,747,160 |
| nssv550443 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4174716 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,747,160 |
| nssv550444 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4174716 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,747,160 |
| nssv550445 | Remapped | Pass | NC_000009.12:g.(?_ 41650014)_(4174716 0_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 41,650,014 | 41,747,160 |
| nssv550439 | Remapped | Perfect | NC_000009.11:g.(?_ 46287856)_(4645447 7_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,287,856 | 46,454,477 |
| nssv550440 | Remapped | Perfect | NC_000009.11:g.(?_ 46287856)_(4645447 7_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,287,856 | 46,454,477 |
| nssv550441 | Remapped | Perfect | NC_000009.11:g.(?_ 46287856)_(4645447 7_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,287,856 | 46,454,477 |
| nssv550442 | Remapped | Perfect | NC_000009.11:g.(?_ 46287856)_(4645447 7_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,287,856 | 46,454,477 |
| nssv550443 | Remapped | Perfect | NC_000009.11:g.(?_ 46287856)_(4645447 7_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,287,856 | 46,454,477 |
| nssv550444 | Remapped | Perfect | NC_000009.11:g.(?_ 46287856)_(4645447 7_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,287,856 | 46,454,477 |
| nssv550445 | Remapped | Perfect | NC_000009.11:g.(?_ 46287856)_(4645447 7_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,287,856 | 46,454,477 |
| nssv548937 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548938 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548939 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548940 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548941 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548942 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548943 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548944 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548945 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv548946 | Remapped | Perfect | NC_000009.11:g.(?_ 46298864)_(4640539 3_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 46,298,864 | 46,405,393 |
| nssv550439 | Submitted genomic | GPC_000000201.1:g. (?_43553554)_(4372 0175_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,553,554 | 43,720,175 | ||
| nssv550440 | Submitted genomic | GPC_000000201.1:g. (?_43553554)_(4372 0175_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,553,554 | 43,720,175 | ||
| nssv550441 | Submitted genomic | GPC_000000201.1:g. (?_43553554)_(4372 0175_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,553,554 | 43,720,175 | ||
| nssv550442 | Submitted genomic | GPC_000000201.1:g. (?_43553554)_(4372 0175_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,553,554 | 43,720,175 | ||
| nssv550443 | Submitted genomic | GPC_000000201.1:g. (?_43553554)_(4372 0175_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,553,554 | 43,720,175 | ||
| nssv550444 | Submitted genomic | GPC_000000201.1:g. (?_43553554)_(4372 0175_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,553,554 | 43,720,175 | ||
| nssv550445 | Submitted genomic | GPC_000000201.1:g. (?_43553554)_(4372 0175_?)dup | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,553,554 | 43,720,175 | ||
| nssv548937 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548938 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548939 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548940 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548941 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548942 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548943 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548944 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548945 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)del | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 | ||
| nssv548946 | Submitted genomic | GPC_000000201.1:g. (?_43564562)_(4367 1091_?)dup | NCBI34 (hg16) | GPC_000000201.1 | Chr9 | 43,564,562 | 43,671,091 |