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dbVar

Database of genomic structural variation

nsv471632

Organism: Homo sapiens

Study:nstd32 (Sharp et al. 2005)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:172,458

Publication(s):Sharp et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 761 SVs from 77 studies. See in: genome view

Remapped(Score: Perfect):100,093,509-100,265,966

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv471632	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	100,093,509	100,265,966
nsv471632	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	99,429,213	99,601,670
nsv471632	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000005.7	Chr5	99,505,429	99,677,886

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv550316	copy number loss	GM10494A	BAC aCGH	Probe signal intensity	55
nssv550317	copy number loss	JK1061	BAC aCGH	Probe signal intensity	51

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv550316	Remapped	Perfect	NC_000005.10:g.(?_ 100093509)_(100265 966_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	100,093,509	100,265,966
nssv550317	Remapped	Perfect	NC_000005.10:g.(?_ 100093509)_(100265 966_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	100,093,509	100,265,966
nssv550316	Remapped	Perfect	NC_000005.9:g.(?_9 9429213)_(99601670 _?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	99,429,213	99,601,670
nssv550317	Remapped	Perfect	NC_000005.9:g.(?_9 9429213)_(99601670 _?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	99,429,213	99,601,670
nssv550316	Submitted genomic		NC_000005.7:g.(?_9 9505429)_(99677886 _?)del	NCBI34 (hg16)		NC_000005.7	Chr5	99,505,429	99,677,886
nssv550317	Submitted genomic		NC_000005.7:g.(?_9 9505429)_(99677886 _?)del	NCBI34 (hg16)		NC_000005.7	Chr5	99,505,429	99,677,886

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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