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dbVar

Database of genomic structural variation

nsv471598

Organism: Homo sapiens

Study:nstd32 (Sharp et al. 2005)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:164,576

Publication(s):Sharp et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1900 SVs from 100 studies. See in: genome view

Remapped(Score: Perfect):25,457,548-25,622,123

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv471598	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	25,457,548	25,622,123
nsv471598	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000022.10	Chr22	25,853,515	26,018,090
nsv471598	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000022.7	Chr22	24,178,069	24,342,644

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv550105	copy number gain	GM10469A	BAC aCGH	Probe signal intensity	56
nssv550106	copy number gain	GM10493	BAC aCGH	Probe signal intensity	65
nssv550107	copy number loss	GM15731	BAC aCGH	Probe signal intensity	42
nssv550108	copy number gain	GM17016	BAC aCGH	Probe signal intensity	47
nssv550109	copy number gain	GM17020A	BAC aCGH	Probe signal intensity	43

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv550105	Remapped	Perfect	NC_000022.11:g.(?_ 25457548)_(2562212 3_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,457,548	25,622,123
nssv550106	Remapped	Perfect	NC_000022.11:g.(?_ 25457548)_(2562212 3_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,457,548	25,622,123
nssv550107	Remapped	Perfect	NC_000022.11:g.(?_ 25457548)_(2562212 3_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,457,548	25,622,123
nssv550108	Remapped	Perfect	NC_000022.11:g.(?_ 25457548)_(2562212 3_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,457,548	25,622,123
nssv550109	Remapped	Perfect	NC_000022.11:g.(?_ 25457548)_(2562212 3_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,457,548	25,622,123
nssv550105	Remapped	Perfect	NC_000022.10:g.(?_ 25853515)_(2601809 0_?)dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,853,515	26,018,090
nssv550106	Remapped	Perfect	NC_000022.10:g.(?_ 25853515)_(2601809 0_?)dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,853,515	26,018,090
nssv550107	Remapped	Perfect	NC_000022.10:g.(?_ 25853515)_(2601809 0_?)del	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,853,515	26,018,090
nssv550108	Remapped	Perfect	NC_000022.10:g.(?_ 25853515)_(2601809 0_?)dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,853,515	26,018,090
nssv550109	Remapped	Perfect	NC_000022.10:g.(?_ 25853515)_(2601809 0_?)dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,853,515	26,018,090
nssv550105	Submitted genomic		NC_000022.7:g.(?_2 4178069)_(24342644 _?)dup	NCBI34 (hg16)		NC_000022.7	Chr22	24,178,069	24,342,644
nssv550106	Submitted genomic		NC_000022.7:g.(?_2 4178069)_(24342644 _?)dup	NCBI34 (hg16)		NC_000022.7	Chr22	24,178,069	24,342,644
nssv550107	Submitted genomic		NC_000022.7:g.(?_2 4178069)_(24342644 _?)del	NCBI34 (hg16)		NC_000022.7	Chr22	24,178,069	24,342,644
nssv550108	Submitted genomic		NC_000022.7:g.(?_2 4178069)_(24342644 _?)dup	NCBI34 (hg16)		NC_000022.7	Chr22	24,178,069	24,342,644
nssv550109	Submitted genomic		NC_000022.7:g.(?_2 4178069)_(24342644 _?)dup	NCBI34 (hg16)		NC_000022.7	Chr22	24,178,069	24,342,644

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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