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dbVar

Database of genomic structural variation

nsv470694

Organism: Homo sapiens

Study:nstd30 (Jakobsson et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:271,066

Description:Single-copy duplication
Publication(s):Jakobsson et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 787 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):83,105,263-83,376,328

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv470694	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	83,105,263	83,376,328
nsv470694	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	83,154,414	83,425,479
nsv470694	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	83,237,104	83,508,169

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv547534	copy number gain	HGDP00544	SNP array	SNP genotyping analysis	3	14
nssv547545	copy number gain	HGDP00947	SNP array	SNP genotyping analysis	3	5

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv547534	Remapped	Perfect	NC_000003.12:g.(?_ 83105263)_(8322314 0_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	83,105,263	83,223,140
nssv547545	Remapped	Perfect	NC_000003.12:g.(?_ 83120825)_(8337632 8_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	83,120,825	83,376,328
nssv547534	Remapped	Perfect	NC_000003.11:g.(?_ 83154414)_(8327229 1_?)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	83,154,414	83,272,291
nssv547545	Remapped	Perfect	NC_000003.11:g.(?_ 83169976)_(8342547 9_?)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	83,169,976	83,425,479
nssv547534	Submitted genomic		NC_000003.10:g.(?_ 83237104)_(8335498 1_?)dup	NCBI36 (hg18)		NC_000003.10	Chr3	83,237,104	83,354,981
nssv547545	Submitted genomic		NC_000003.10:g.(?_ 83252666)_(8350816 9_?)dup	NCBI36 (hg18)		NC_000003.10	Chr3	83,252,666	83,508,169

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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