Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv469766

Organism: Homo sapiens

Study:nstd29 (Locke et al. 2006)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:146,416

Publication(s):Locke et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 732 SVs from 31 studies. See in: genome view

Remapped(Score: Pass):24,774,665-24,921,080

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv469766	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000024.10	ChrY	24,774,665	24,921,080
nsv469766	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000024.9	ChrY	26,920,812	27,067,227
nsv469766	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000024.6	ChrY	25,765,998	25,923,261

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv1672362	copy number loss	BAC aCGH	Probe signal intensity
nssv1672570	copy number gain	BAC aCGH	Probe signal intensity
nssv1672729	copy number gain	BAC aCGH	Probe signal intensity
nssv1674656	copy number gain	BAC aCGH	Probe signal intensity
nssv1676509	copy number gain	BAC aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1672362	Remapped	Pass	NC_000024.10:g.(?_ 24774665)_(2492108 0_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	24,774,665	24,921,080
nssv1672570	Remapped	Pass	NC_000024.10:g.(?_ 24774665)_(2492108 0_?)dup	GRCh38.p12	First Pass	NC_000024.10	ChrY	24,774,665	24,921,080
nssv1672729	Remapped	Pass	NC_000024.10:g.(?_ 24774665)_(2492108 0_?)dup	GRCh38.p12	First Pass	NC_000024.10	ChrY	24,774,665	24,921,080
nssv1674656	Remapped	Pass	NC_000024.10:g.(?_ 24774665)_(2492108 0_?)dup	GRCh38.p12	First Pass	NC_000024.10	ChrY	24,774,665	24,921,080
nssv1676509	Remapped	Pass	NC_000024.10:g.(?_ 24774665)_(2492108 0_?)dup	GRCh38.p12	First Pass	NC_000024.10	ChrY	24,774,665	24,921,080
nssv1672362	Remapped	Pass	NC_000024.9:g.(?_2 6920812)_(27067227 _?)del	GRCh37.p13	First Pass	NC_000024.9	ChrY	26,920,812	27,067,227
nssv1672570	Remapped	Pass	NC_000024.9:g.(?_2 6920812)_(27067227 _?)dup	GRCh37.p13	First Pass	NC_000024.9	ChrY	26,920,812	27,067,227
nssv1672729	Remapped	Pass	NC_000024.9:g.(?_2 6920812)_(27067227 _?)dup	GRCh37.p13	First Pass	NC_000024.9	ChrY	26,920,812	27,067,227
nssv1674656	Remapped	Pass	NC_000024.9:g.(?_2 6920812)_(27067227 _?)dup	GRCh37.p13	First Pass	NC_000024.9	ChrY	26,920,812	27,067,227
nssv1676509	Remapped	Pass	NC_000024.9:g.(?_2 6920812)_(27067227 _?)dup	GRCh37.p13	First Pass	NC_000024.9	ChrY	26,920,812	27,067,227
nssv1672362	Submitted genomic		NC_000024.6:g.(?_2 5765998)_(25923261 _?)del	NCBI34 (hg16)		NC_000024.6	ChrY	25,765,998	25,923,261
nssv1672570	Submitted genomic		NC_000024.6:g.(?_2 5765998)_(25923261 _?)dup	NCBI34 (hg16)		NC_000024.6	ChrY	25,765,998	25,923,261
nssv1672729	Submitted genomic		NC_000024.6:g.(?_2 5765998)_(25923261 _?)dup	NCBI34 (hg16)		NC_000024.6	ChrY	25,765,998	25,923,261
nssv1674656	Submitted genomic		NC_000024.6:g.(?_2 5765998)_(25923261 _?)dup	NCBI34 (hg16)		NC_000024.6	ChrY	25,765,998	25,923,261
nssv1676509	Submitted genomic		NC_000024.6:g.(?_2 5765998)_(25923261 _?)dup	NCBI34 (hg16)		NC_000024.6	ChrY	25,765,998	25,923,261

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI